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BioLiP
>protein
NSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFYPIFIITLWMAGWYFNQVFATCLG
LVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTLLGALGIANSFLDEYLDLNIAKK

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ssw:B 140 139 1.0000 0.9929 1.0000 1.85e-100 6sss:B, 6sss:E, 6sss:F, 6ssu:A, 6ssu:B, 6ssu:C, 6ssw:A, 6ssw:C
2 4ntb:A 146 126 0.4173 0.3973 0.4603 1.21e-33 4ntf:A
3 4jrz:A 155 99 0.3669 0.3290 0.5152 8.05e-32 3b29:A, 3hkk:A, 5hv9:A, 4j7t:A, 4j7y:A, 4jc7:A, 4jcz:A, 3leo:A, 3pcv:A, 2pno:A, 2pno:B, 2pno:C, 2pno:D, 2pno:E, 2pno:F, 2pno:G, 2pno:H, 2pno:I, 2pno:J, 2pno:K, 2pno:L, 6r7d:A, 6r7d:B, 6r7d:C, 6r7d:D, 6r7d:F, 6r7d:E, 6r7d:G, 6r7d:H, 6r7d:I, 6r7d:J, 6r7d:K, 6r7d:L, 2uuh:A
4 6vgc:D 155 130 0.3597 0.3226 0.3846 6.52e-18 2q7m:A, 2q7m:C, 2q7m:B, 2q7m:D, 2q7m:F, 2q7m:E, 2q7r:A, 2q7r:B, 2q7r:C, 2q7r:D, 2q7r:E, 2q7r:F, 6vgc:A, 6vgc:C, 6vgc:B, 6vgc:E, 6vgc:F, 6vgi:A, 6vgi:F, 6vgi:B, 6vgi:C, 6vgi:D, 6vgi:E
5 6ohj:B 187 33 0.0863 0.0642 0.3636 3.6
6 8y9c:B 1609 49 0.1223 0.0106 0.3469 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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