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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NRSLLGYPLRRAAAMEMLYGGICIQHLAQPPFPLRKIQSESLPPPSLQGERDDLELEVKDSTGNVMGYRLFPVNIGIRAR
TESVRVRSEDCYKRFLAQKHCAAAGVPLQFPAPSSITNSNCLATPRAASHFHPPSSSLSLFTRPADSQGGDVGRTTPADV
AAYHPRAWRPYQMLKPMPHNWGPAVRSSGVRGPHMQLLQERI

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hiv:BP 202 202 1.0000 1.0000 1.0000 4.04e-151 6hix:BP
2 7aih:Aq 258 243 0.4554 0.3566 0.3786 4.48e-44 7ane:Aq
3 1v9p:A 584 82 0.1188 0.0411 0.2927 0.33 1dgs:A, 1dgs:B, 1v9p:B
4 5x7m:A 443 51 0.0743 0.0339 0.2941 3.4 5x7m:B, 5x7n:A, 5x7n:B
5 4v1z:A 440 28 0.0594 0.0273 0.4286 7.7 4v20:A
6 3ut0:A 804 53 0.1040 0.0261 0.3962 8.1 3rrx:A, 3usz:A, 3ut0:B, 3ut0:C, 3ut0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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