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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NRPERIQEAIAQDKTSVIIDPSQIGSTEGKPLLSMKCNLYIHEILSRWKASLEAYHPELFLDTKKALFPLLLQLRRNQLA
PDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRL
ITFEEWYTSNH

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6exn:a 171 171 1.0000 1.0000 1.0000 1.34e-126 6bk8:N
2 3acw:A 284 57 0.0877 0.0528 0.2632 0.57 3acx:A, 3acy:A, 3adz:A, 3ae0:A, 3ae0:B, 4e9u:A, 4e9z:A, 4ea0:A, 4ea0:B, 4ea1:A, 4ea2:A, 4f6v:A, 4f6x:A, 3lgz:B, 3npr:A, 3nri:A, 3tfn:A, 3tfp:A, 3tfv:A, 3vje:A, 3vje:B, 3w7f:A, 3w7f:B, 2zcq:A, 2zcr:A, 2zcs:A, 2zy1:A
3 1kqf:A 982 96 0.1520 0.0265 0.2708 2.0 1kqg:A
4 3c6g:B 467 76 0.1462 0.0535 0.3289 2.5 3c6g:A, 3czh:A, 3czh:B, 3dl9:A, 3dl9:B
5 7tbj:A2 1269 86 0.1462 0.0197 0.2907 3.1 7tbj:A4, 7tbk:A2, 7tbk:A4, 7tbl:A2, 7tbl:A4, 7tbm:A2, 7tbm:A4
6 7xuh:A 707 76 0.1462 0.0354 0.3289 3.5 7xuh:B, 7xuj:A, 7xuj:B, 7xul:A, 7xul:B
7 1b8g:B 425 79 0.1228 0.0494 0.2658 6.9 1b8g:A, 1m4n:A, 1m7y:A, 3piu:A, 1ynu:A
8 5ve5:A 350 35 0.0702 0.0343 0.3429 7.2 5ve3:B, 5ve3:A, 5ve4:A, 5ve4:B, 5ve4:C, 5ve5:B, 5ve5:C
9 6wou:A 3921 33 0.0702 0.0031 0.3636 7.4 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
10 5dzy:B 415 46 0.0994 0.0410 0.3696 8.4 5dzx:A, 5dzx:B, 5dzy:D, 5dzy:A, 5dzy:C, 5dzy:E, 5dzy:F
11 1tlq:A 161 68 0.1287 0.1366 0.3235 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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