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BioLiP
>protein
NRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRDIDYQKL
HDAFFKWQTKPKLTIHGDLYYEGKEFEGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPP
LYGDVFGTNAAEIDRTPWGELE

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vpx:2 187 187 1.0000 0.9733 0.9733 1.00e-132 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
2 8i0r:2 250 246 0.9780 0.7120 0.7236 1.87e-115 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
3 7dvq:2 216 232 0.9121 0.7685 0.7155 1.21e-103 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
4 7q3l:B 110 106 0.5220 0.8636 0.8962 7.46e-62
5 7q3l:B 110 27 0.0659 0.1091 0.4444 0.35
6 7dco:2 220 211 0.4231 0.3500 0.3649 1.03e-33 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
7 2zof:A 478 69 0.0934 0.0356 0.2464 0.058 4ruh:A, 4ruh:B, 2zof:B, 2zog:A, 2zog:B
8 5en7:A 177 39 0.0714 0.0734 0.3333 1.8 5en6:A, 5en7:C, 5en7:E, 5en7:G
9 2a4x:A 131 48 0.0879 0.1221 0.3333 3.8 2a4w:A, 2a4w:B, 1kll:A
10 6dbb:A 504 75 0.1264 0.0456 0.3067 6.3 6dbb:B, 6dbb:C
11 1gxu:A 88 29 0.0549 0.1136 0.3448 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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