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BioLiP
>protein
NRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDR
MARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fhz:D 166 154 1.0000 0.9277 1.0000 1.69e-105 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
2 6wjp:A 80 79 0.2792 0.5375 0.5443 2.02e-25 5jvo:A, 5jvo:B, 6wjo:A, 6wjo:B, 6wjp:B
3 1b4b:A 71 64 0.1623 0.3521 0.3906 6.75e-12 1b4b:C, 1b4b:B
4 2p5l:D 64 58 0.1494 0.3594 0.3966 6.26e-10 2p5l:C, 2p5l:G, 2p5l:H
5 2p5m:A 82 61 0.1429 0.2683 0.3607 1.96e-09 2p5m:B, 2p5m:C
6 1xxa:C 73 68 0.1494 0.3151 0.3382 3.05e-04 1xxa:A, 1xxa:B, 1xxa:D, 1xxa:F, 1xxa:E, 1xxb:A, 1xxb:C, 1xxb:B, 1xxb:D, 1xxb:E, 1xxb:F
7 5ilg:A 265 70 0.1299 0.0755 0.2857 1.4 5ilg:B, 5ilo:A, 5ilo:B
8 4f66:A 478 53 0.1169 0.0377 0.3396 3.2 4f66:B, 4f79:A, 4gpn:A, 4gpn:B
9 2qb5:A 338 43 0.1039 0.0473 0.3721 4.9 2q7d:A, 2q7d:B, 2qb5:B
10 8i3a:A 562 59 0.1234 0.0338 0.3220 5.2 8i39:A, 8i39:B, 8i3a:B, 8i3b:A, 8i3b:B, 8i3c:A, 8i3c:B, 8iwn:A, 8iwn:C, 8wam:A, 8wam:B, 8wba:A, 8wba:B
11 7yff:B 740 56 0.0909 0.0189 0.2500 5.2 7yff:D
12 8wbx:B 467 59 0.1234 0.0407 0.3220 6.1
13 2pve:A 52 21 0.0714 0.2115 0.5238 7.1 2pve:B, 2pve:C
14 2d6f:D 522 81 0.1688 0.0498 0.3210 7.9 2d6f:C
15 7vqo:A 1180 23 0.0649 0.0085 0.4348 9.6 7vqo:B, 7vqo:C, 7vqo:D
16 4d9n:A 391 91 0.1494 0.0588 0.2527 9.6 4d9m:A, 4d9m:B, 4d9n:B
17 6zxg:j 116 34 0.0779 0.1034 0.3529 9.8 6zxf:j, 6zxh:j

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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