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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVGTQYRLPSGKCPVFGKGIIIETTFLKPVAKDGGFAFPPTNPLISPMTLNG
MRDFYKNNEYVKNLDELTLCSRHAGNMNPDNKNSNYKYPAVYDYNDKKCHILYIAAQENNGFCFRPAKDKLFENYTYLSK
NVVDNWEEVCPRKNLENAKFGLWVDGNCEDIPHVNEFSANDLFECNKLVFELSASDQPKDRYKSHGKGYNWGNYNRETQK
CEIFNVKPTCLINNSSYIATTALSHPIEVE

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n87:A 314 314 0.9926 0.8535 0.8535 0.0
2 6n7q:A 266 273 0.9741 0.9887 0.9634 0.0
3 3srj:A 298 289 0.9185 0.8322 0.8581 1.07e-175 3sri:A, 3srj:B, 4z09:A, 4z0d:A, 4z0e:A, 4z0f:A
4 4apm:A 339 277 0.3778 0.3009 0.3682 6.41e-50
5 4yiv:A 374 311 0.3481 0.2513 0.3023 3.30e-30
6 6u9w:A 562 60 0.0741 0.0356 0.3333 0.73 8tr5:A, 8tr5:B, 8tr5:C, 8trj:A, 8trj:C, 8trj:B, 6u9v:A, 6u9v:B, 6u9v:C, 6u9w:B, 6u9w:C, 8v4s:A, 8v4s:B, 8v4s:C
7 1kl7:A 509 45 0.0593 0.0314 0.3556 1.5 1kl7:B
8 3cei:A 213 18 0.0407 0.0516 0.6111 1.5 3cei:B
9 6gio:C 436 59 0.0519 0.0321 0.2373 2.2 6gio:D, 6gio:A, 6gio:B
10 5ldr:A 731 58 0.0519 0.0192 0.2414 3.5 5ldr:B
11 1lf9:A 674 96 0.0852 0.0341 0.2396 4.0 1lf9:B
12 4l63:A 249 47 0.0556 0.0602 0.3191 4.9 4l6t:A
13 4m0x:A 369 41 0.0556 0.0407 0.3659 7.9 4m0x:B
14 7bvs:A 290 37 0.0370 0.0345 0.2703 9.1 7exb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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