Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLELL

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2p5m:A 82 79 1.0000 0.9634 1.0000 4.22e-54 2p5m:B, 2p5m:C
2 1b4b:A 71 71 0.5696 0.6338 0.6338 3.34e-31 1b4b:C, 1b4b:B
3 6wjp:A 80 61 0.3038 0.3000 0.3934 2.16e-13 5jvo:A, 5jvo:B, 6wjo:A, 6wjo:B, 6wjp:B
4 3fhz:D 166 61 0.2785 0.1325 0.3607 1.10e-09 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
5 1xxa:C 73 67 0.3544 0.3836 0.4179 4.90e-06 1xxa:A, 1xxa:B, 1xxa:D, 1xxa:F, 1xxa:E, 1xxb:A, 1xxb:C, 1xxb:B, 1xxb:D, 1xxb:E, 1xxb:F
6 2aos:A 361 25 0.1392 0.0305 0.4400 1.8 2fdm:A, 4mav:A, 4ml4:A, 4nsb:A, 2olh:A, 4q7n:A, 5z05:A, 5z3s:A, 5z4w:A, 1zbc:A, 1zbk:A, 1zbv:A, 1zbw:A, 1zl1:A
7 1qo8:A 564 28 0.1519 0.0213 0.4286 2.3 1qo8:D
8 8jbw:A 364 32 0.1646 0.0357 0.4062 3.0
9 5jc7:A 641 46 0.1772 0.0218 0.3043 3.2
10 5jc3:A 668 46 0.1772 0.0210 0.3043 3.4 5jc3:B, 5jc7:B, 5jcf:A, 5jcf:B, 5jch:A, 5jch:B
11 8r42:B 362 23 0.1266 0.0276 0.4348 3.5 8r41:A, 8r41:B, 8r42:A, 8r4x:A, 8r4x:B, 8r4x:C, 8r4x:D
12 2y2l:B 476 46 0.1646 0.0273 0.2826 3.5 2fff:B, 2jch:A, 2je5:A, 2je5:B, 2xd1:A, 2xd1:B, 2xd5:A, 2xd5:B, 2y2g:A, 2y2g:B, 2y2h:A, 2y2h:B, 2y2i:A, 2y2j:A, 2y2k:A, 2y2l:A, 2y2m:A, 2y2n:A, 2y2o:A, 2y2p:A, 2y2q:A, 2y2q:B, 7zui:AAA, 7zuj:AAA, 7zuk:AAA, 7zul:AAA
13 6wn9:A 155 31 0.1266 0.0645 0.3226 4.5 6wn9:B
14 3m4p:A 435 22 0.1139 0.0207 0.4091 7.6 3m4p:B, 3m4p:C, 3m4p:D
15 5nd4:C 337 35 0.1266 0.0297 0.2857 8.4
16 8bjs:A 343 35 0.1266 0.0292 0.2857 8.6
17 8j5u:A 534 32 0.1392 0.0206 0.3438 9.1 8j5q:A, 8j5s:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218