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BioLiP
>protein
NPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFE
PPWTLARLSEKARRLLGW

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3cq3:A 98 98 1.0000 1.0000 1.0000 1.72e-66 3cq3:B, 3cq3:C, 3cq3:D, 3cq3:E
2 3jb9:B 904 44 0.1633 0.0177 0.3636 1.7
3 5zdb:A 253 40 0.1837 0.0711 0.4500 3.4 5zdb:B, 5zdc:C, 5zdc:F, 5zdc:H, 5zdc:J, 5zdc:L, 5zdc:D, 5zdd:A, 5zde:C, 5zdf:A, 5zdg:C
4 7uvx:W 78 24 0.1020 0.1282 0.4167 5.8 7m4v:W, 7m4w:W, 7m4x:W, 7m4y:W, 7m4z:W, 7ryf:W, 7ryg:W, 7ryh:W, 7uvv:W, 7uvw:W, 7uvy:W, 7uvz:W, 7uw1:W, 6v39:W, 6v3a:W, 6v3b:W, 6v3d:W, 6yhs:T, 6ysi:T
5 4x1t:A 321 19 0.1122 0.0343 0.5789 6.7
6 8fne:A 525 36 0.1531 0.0286 0.4167 7.0 8fne:B, 8fne:C, 8fne:D, 8fv5:A, 8fv5:B, 8fv5:C, 8fv5:D, 8fv5:I, 8fv5:J, 8fv5:K, 8fv5:L, 8fv5:M, 8fv5:N, 8fv5:O, 8fv5:P, 8fv5:Q, 8fv5:R, 8fv5:S, 8fv5:T

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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