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BioLiP
>protein
NPKRSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEILVLRRNSFRLEKILVSVGC
TCVTPIVH

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8uss:A 107 88 0.9659 0.7944 0.9659 8.66e-60
2 5vb9:A 108 90 0.9318 0.7593 0.9111 1.23e-55 7ama:A, 7ama:B, 7amg:A, 7amg:B, 7amg:C, 7amg:D, 8cdg:A, 8cdg:B, 8dyf:A, 8dyf:B, 8dyg:A, 8dyg:B, 8dyh:A, 8dyh:B, 8dyi:A, 8dyi:B, 5hhv:A, 5hhx:A, 5hi3:A, 5hi3:B, 5hi4:A, 5hi4:B, 5hi5:A, 5hi5:B, 8usr:A, 8usr:B, 8usr:D, 5vb9:B
3 3jvf:B 104 88 0.6023 0.5096 0.6023 4.26e-32
4 6z1p:AR 274 73 0.2386 0.0766 0.2877 0.33
5 2qsc:H 211 48 0.1705 0.0711 0.3125 0.89
6 8htu:H 95 18 0.0909 0.0842 0.4444 2.6 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
7 8opp:A 670 34 0.1136 0.0149 0.2941 2.8
8 8opt:A 783 34 0.1136 0.0128 0.2941 3.0 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
9 5vt3:B 319 16 0.1136 0.0313 0.6250 4.5 5usx:A, 5usx:B, 5vt3:A
10 8tr2:A 745 21 0.1136 0.0134 0.4762 4.9 2e4u:A, 2e4u:B, 2e4v:A, 2e4v:B, 2e4w:A, 2e4w:B, 2e4x:A, 2e4x:B, 2e4y:A, 2e4y:B, 8tqb:A, 8tqb:B, 8tr0:B, 8tr2:B, 8trc:A, 8trc:B, 8trd:A, 8trd:B, 7wi6:A, 7wi6:B, 7wi8:A, 7wi8:B
11 5u63:B 319 15 0.1136 0.0313 0.6667 5.5 5u63:A
12 8jcu:3 765 20 0.1136 0.0131 0.5000 6.0 6b7h:A, 5cnk:A, 5cnm:A, 8jcv:3, 8jcw:3, 8jcx:3, 8jcy:3, 8jcz:3, 8jd0:3, 8jd1:3, 8jd2:3, 8jd3:3, 3sm9:A, 8tr0:A, 7wih:A, 7wih:B, 4xar:A
13 8jjm:A 484 43 0.1591 0.0289 0.3256 6.4 8jjm:B
14 4pu5:A 438 20 0.1023 0.0205 0.4500 6.9
15 6wb7:A 296 52 0.1705 0.0507 0.2885 7.6 6wb7:B, 6wb7:C, 6wb7:D
16 5k97:A 341 27 0.1136 0.0293 0.3704 8.7 5kse:A, 3q8k:A, 3q8l:A, 3q8m:B, 3q8m:A, 5um9:A
17 5zog:A 316 27 0.1136 0.0316 0.3704 9.0 1ul1:X, 5zoe:A, 5zof:A
18 5bwm:B 205 41 0.1250 0.0537 0.2683 9.3 4xsh:B
19 1ygp:A 858 18 0.0909 0.0093 0.4444 9.3 1ygp:B
20 5fv7:A 283 27 0.1136 0.0353 0.3704 9.4 5fv7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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