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BioLiP
>protein
NNGSYPCPCCGNKTIDEPGCYEICPICGWEDDPVQSADPDFSGGANSPSLNEAKRAFNEQ

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ey3:A 60 60 1.0000 1.0000 1.0000 1.29e-39 8ey4:I
2 2hr5:A 170 24 0.2000 0.0706 0.5000 0.24 2hr5:B, 3mps:A, 3mps:B, 3mps:D, 3mps:I, 3mps:F, 3mps:K, 3mps:G, 3mps:H, 1nnq:A, 1nnq:B, 3pwf:A, 3pwf:B, 3pza:A, 3pza:B, 3qvd:A, 3qvd:B, 3qvd:C, 3qvd:D, 3qvd:E, 3qvd:F, 3qvd:G, 3qvd:H
3 6wq6:A 547 53 0.2500 0.0274 0.2830 1.2 6wqi:A, 6wqi:B, 6wqs:A, 6wqt:A
4 9c9y:A 612 39 0.2000 0.0196 0.3077 2.6 9ca0:A, 9ca1:A
5 3f2b:A 994 53 0.2667 0.0161 0.3019 3.1 3f2c:A, 3f2d:A
6 6scx:A 328 27 0.2167 0.0396 0.4815 4.6 6o3p:A, 6scx:B, 6scx:C
7 2ze0:A 531 33 0.2000 0.0226 0.3636 7.7
8 2akl:A 116 32 0.2000 0.1034 0.3750 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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