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BioLiP
>protein
NMLTELAGASALDHPLLVEVEYVGTLYSFEPDPETLFDALLP

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nl9:G 42 42 1.0000 1.0000 1.0000 2.84e-24
2 7nkb:G 251 30 0.5714 0.0956 0.8000 1.08e-08 7nkk:G, 7nkn:G
3 7nkb:G 251 19 0.4524 0.0757 1.0000 2.73e-06 7nkk:G, 7nkn:G
4 7u6m:C 342 32 0.2857 0.0351 0.3750 0.90 5f52:A, 5f52:B, 5f52:C, 5f52:D, 1hfw:A, 1hfw:B, 1hfw:C, 1hfw:D, 1hg0:A, 1hg0:B, 1hg0:C, 1hg0:D, 1hg1:A, 1hg1:B, 1hg1:C, 1hg1:D, 5hw0:A, 5hw0:B, 5hw0:C, 5hw0:D, 5i3z:A, 5i3z:B, 5i3z:C, 5i3z:D, 5i48:A, 5i48:B, 5i48:C, 5i48:D, 5i4b:A, 5i4b:B, 5i4b:C, 1jsl:A, 1jsl:B, 1jsl:C, 1jsl:D, 1jsr:A, 1jsr:B, 1jsr:C, 1jsr:D, 6pae:A, 6pae:B, 6pae:C, 6pae:D, 7u6m:A, 7u6m:B, 7u6m:D
5 5hkk:G 284 40 0.3095 0.0458 0.3250 1.1 5hkk:O
6 5t79:A 315 27 0.2857 0.0381 0.4444 2.4 3erp:A, 3erp:B
7 3rsj:A 406 16 0.2381 0.0246 0.6250 2.6 3rsj:B, 3rsj:C, 3rsj:D
8 7dua:B 274 40 0.3571 0.0547 0.3750 4.3 7du9:B
9 4fr4:A 350 37 0.3333 0.0400 0.3784 5.0 4fr4:B, 4fr4:C, 4fr4:D, 4fr4:E, 4fr4:F
10 1pyt:C 248 19 0.2381 0.0403 0.5263 6.8
11 8buu:E 206 23 0.1667 0.0340 0.3043 7.1 7aqc:E, 7aqd:E, 7as8:G, 7as9:G, 6ha1:E, 6ha8:E, 6htq:E, 3j3v:E, 3j3w:E, 3j9w:BF, 5njt:Y, 7o5b:b, 7ope:G, 6ppf:E, 6ppk:E, 6pvk:E, 8qcq:E, 7qgu:E, 7qh4:E, 8qpp:b, 7qv1:E, 7qv2:E, 7qv3:E, 8r55:b, 8s1p:E, 8s1u:E, 7s9u:E, 7sae:E, 6tnn:Y, 6tpq:Y
12 7wf3:C 328 18 0.1667 0.0213 0.3889 7.5 2a79:A, 3eau:A, 3eb3:A, 3eb4:A, 6ebk:A, 6ebk:C, 6ebk:E, 6ebk:G, 6ebl:A, 6ebl:C, 6ebl:E, 6ebl:G, 7ej1:A, 7ej1:C, 7ej1:E, 7ej1:G, 7ej2:A, 7ej2:C, 7ej2:E, 7ej2:G, 1exb:A, 4jta:A, 4jta:P, 4jtc:A, 4jtc:G, 4jtd:A, 4jtd:G, 3lnm:A, 3lnm:C, 3lut:A, 1qrq:A, 1qrq:B, 1qrq:C, 1qrq:D, 2r9r:A, 2r9r:G, 7sit:A, 7sit:C, 7siz:A, 7siz:C, 7wf3:G, 7wf3:I, 7wf3:M, 7wf4:G, 7wf4:I, 7wf4:M, 7wf4:o, 5wie:A, 5wie:G, 1zsx:A
13 6kr6:A 713 29 0.2381 0.0140 0.3448 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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