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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NLTLRYRSLVYQLNFDQTLRNVDKATWAPRELVLVVQVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAG
VNFCPVLQVFFPFSIQLYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHFVWERVK
ILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTGMADKVDVKTWKSTEHNMGLALTRNAYQKLIEC
TDTFCTYDDYNWDWTLQYLTVSCLPKFWKVLVPQIPRIFHAMFPETLTISEKFTVVAISPPRKNGGWGDIRDHELCKSYR
RLQ

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vcs:B 323 323 1.0000 1.0000 1.0000 0.0
2 5vcm:B 358 352 0.9876 0.8911 0.9062 0.0 5vcm:A, 5vcs:A
3 4rot:A 268 161 0.1084 0.1306 0.2174 0.84
4 1dbg:A 481 94 0.0743 0.0499 0.2553 1.3 1dbo:A, 1ofl:A, 1ofm:A
5 5x2m:D 422 96 0.0774 0.0592 0.2604 2.4 5x2p:D
6 2r8u:A 131 33 0.0372 0.0916 0.3636 4.1
7 5ggi:B 551 58 0.0526 0.0309 0.2931 4.6 5ggi:A, 5ggj:A, 5ggj:B, 5ggk:A, 5ggk:B, 5ggl:A, 5ggl:B, 5ggn:A, 5ggn:B, 5ggo:A, 5ggo:B, 5ggp:A, 5ggp:B, 5xfc:A, 5xfc:B
8 4rpm:A 395 30 0.0402 0.0329 0.4333 6.4
9 5jbd:B 855 52 0.0588 0.0222 0.3654 8.9 5jbd:A, 5jbe:A, 5jbe:B, 5jbf:A, 5jbf:B
10 5guw:B 449 52 0.0433 0.0312 0.2692 9.7 5guw:D, 5gux:B, 3o0r:B, 3wfb:B, 3wfc:B, 3wfd:B, 3wfe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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