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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NLTKEQHEWLNGWLELWGAWVYSGRLEKRMSSVIAKFMESVDDDGMLISQVVDSVMYIDKKAFGILLSYYAHGSSKHAIA
SYYHRVARPRKMLCRGGGRIQKPSLATCRREVDEILNASLFMIYPV

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6p18:Q 156 138 1.0000 0.8077 0.9130 3.52e-89 6jnx:P, 6jnx:Q, 6p18:P, 6p1a:A, 6p1a:B, 6p1a:C
2 6p19:Q 139 138 0.8651 0.7842 0.7899 3.37e-70
3 8hwl:A 941 60 0.1587 0.0213 0.3333 0.25 8hwl:B, 8hwl:C, 8hwl:E
4 7wtb:B 1147 60 0.1587 0.0174 0.3333 0.25 3bg3:A, 3bg3:B, 3bg3:C, 3bg3:D, 3bg9:A, 3bg9:B, 3bg9:C, 3bg9:D, 8j7o:A, 8j7o:B, 8j7o:C, 8j7o:E, 7wta:C, 7wta:B, 7wta:D, 7wta:A, 7wtb:C, 7wtb:A, 7wtb:D, 7wtc:C, 7wtc:A, 7wtc:B, 7wtc:D, 7wtd:C, 7wtd:D, 7wte:C, 7wte:D
5 2d0o:A 606 31 0.1032 0.0215 0.4194 2.0 2d0o:C, 2d0p:A, 2d0p:C
6 7yyl:E 243 45 0.1032 0.0535 0.2889 4.1 7yyl:F, 7yyl:G, 7yyl:H, 7yzm:G, 7yzm:H, 7yzm:E, 7yzm:F, 7yzq:E, 7yzq:F, 7yzq:G, 7yzq:H
7 7p7q:0 534 45 0.0952 0.0225 0.2667 6.0 7p7r:0, 7p7s:0, 7p7t:0
8 6on3:B 148 50 0.1190 0.1014 0.3000 6.4 6on1:A, 6on1:B, 6on1:C, 6on1:D, 6on1:E, 6on1:F, 6on3:A, 6on3:C, 6on3:D, 6on3:F, 6on3:E
9 3k4y:A 260 57 0.1270 0.0615 0.2807 7.4 3k4y:B, 3k52:A, 3k52:B, 3k56:A, 3k56:B
10 8z99:H 582 45 0.1270 0.0275 0.3556 7.5 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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