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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPAQRASWIGYAIAYHLLEDYEMAAKILEEFRKTQQTSPDKVDYEYSEL
LLYQNQVLREAGLYREALEHLCTYEKQICDKLAVEETKGELLLQLCRLEDAADVYRGLQERNPENWAYYKGLEKALKPAN
MLERLKIYEEAWTKYPRGLVPRRLPLNFLSGEKFKECLDKFLRMNFSKGCPPVFNTLRSLYKDKEKVAIIEELVVGYETS
LKSCRLFNPNDDGKEEPPTTLLWVQYYLAQHYDKIGQPSIALEYINTAIESTPTLIELFLVKAKIYKHAGNIKEAARWMD
EAQALDTADRFINSKCAKYMLKANLIKEAEEMCSKFTREGTSAVENLNEMQCMWFQTECAQAYKAMNKFGEALKKCHEIE
RHFIEITDDQFDFHTYCMRKITLRSYVDLLKLEDVLRQHPFYFKAARIAIEIYLKLHDNPLPKEELIPEKLAKVETPLEE
AIKFLTPLKNLVKNKIETHLFAFEIYFRKEKFLLMLQSVKRAFAIDSSHPWLHECMIRLFNTAVCESKDLSDTVRTVLKQ
EMNRLFGATNPKNFNETFLKRNSDSLPHRLSAAKMVYYLDPSSQKRAIELATTLDESLTNRNLQTCMEVLEALYDGSLGD
CKEAAEIYRANCHKLFPYALAFMPP

The query sequence (length=665) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6c95:A 773 665 1.0000 0.8603 1.0000 0.0 6c9m:A, 6c9m:C, 6ppl:B, 6pw9:B
2 9f1b:DB 837 729 0.9774 0.7766 0.8916 0.0 9f1c:DB, 9f1d:DB, 9fpz:B, 9fq0:B
3 4xnh:A 786 583 0.2707 0.2290 0.3087 4.13e-75 4hnw:A, 6o07:A, 4xpd:A, 4y49:G
4 4hnx:A 713 565 0.2692 0.2511 0.3168 2.06e-74
5 6hd7:t 838 515 0.2466 0.1957 0.3184 1.77e-70
6 5lwv:A 711 70 0.0376 0.0352 0.3571 0.31 5bnw:A, 6e37:A, 8fe6:A, 8fe6:C, 8fe6:E, 8fe6:G, 4gyw:A, 4gyy:A, 4gyy:C, 4gz3:A, 5hgv:A, 5nps:A, 6tka:AAA, 5vie:A, 5vie:C, 5vif:A
7 7yeh:A 1020 70 0.0376 0.0245 0.3571 0.39 4ay5:A, 4ay5:B, 4ay5:C, 4ay5:D, 4ay6:A, 4ay6:B, 4ay6:C, 4ay6:D, 5c1d:A, 4cdr:A, 4cdr:B, 4cdr:C, 4cdr:D, 8cm9:A, 8cm9:B, 8cm9:D, 8cm9:C, 8fe7:A, 8fe7:C, 8fe7:E, 8fe7:G, 8fuf:A, 8fuf:C, 8fuf:E, 8fuf:G, 4gyw:C, 4gz3:C, 4gz5:A, 4gz5:B, 4gz5:C, 4gz5:D, 4gz6:A, 4gz6:B, 4gz6:C, 4gz6:D, 5hgv:C, 6ibo:A, 5lvv:A, 6ma1:A, 6ma2:A, 6ma3:A, 6ma4:A, 6ma5:A, 4n39:A, 4n3a:A, 4n3b:A, 4n3c:A, 5npr:A, 3pe3:A, 3pe3:B, 3pe3:C, 3pe3:D, 3pe4:A, 3pe4:C, 6q4m:A, 3tax:A, 3tax:C, 1w3b:A, 4xi9:A, 4xi9:B, 4xi9:C, 4xi9:D, 4xif:A, 4xif:B, 4xif:C, 4xif:D
8 2eb6:A 267 57 0.0256 0.0637 0.2982 0.47 2eb5:A, 2eb5:B, 2eb5:C, 2eb5:D, 2eb5:E, 2eb6:B, 2eb6:C, 2eb6:D, 2eb6:E
9 8qca:B 756 89 0.0376 0.0331 0.2809 0.89
10 7y4i:A 822 129 0.0511 0.0414 0.2636 0.96 8dti:A, 8dti:B
11 5udk:A 461 77 0.0346 0.0499 0.2987 2.0 6c6k:A, 6c6k:B, 5udi:A, 5udj:A, 5udl:A, 5w5h:A, 5w5h:C
12 1mqs:A 588 47 0.0211 0.0238 0.2979 4.0
13 5w5i:C 436 64 0.0331 0.0505 0.3438 6.4 5w5i:A
14 6b2w:A 333 62 0.0241 0.0480 0.2581 7.0 6b2w:B
15 9ash:B 297 71 0.0346 0.0774 0.3239 8.1 9asi:B, 6xn5:B
16 5a01:A 681 69 0.0301 0.0294 0.2899 8.1 5a01:B, 5a01:C
17 6xn7:B 277 71 0.0346 0.0830 0.3239 8.3 6xn3:B, 6xn4:B
18 8ap6:E 383 77 0.0346 0.0601 0.2987 8.6 8ap6:e, 8ap7:E, 8ap7:e, 8apa:e, 8apb:e, 8apc:e, 8apd:e, 8ape:e, 8apf:e, 8apg:e, 8aph:e, 8apj:e, 8apk:e
19 1na0:B 119 71 0.0316 0.1765 0.2958 8.7 1na3:A, 1na3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218