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BioLiP
>protein
NLEELRTQVDQLNIDLLELISKRANLVQEREMLNTILAANEGPFEDSTVQKLFKEIFKAGLHSKALLVSRKNKKEDTIVT
VKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISE
IVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEK
ATRNTLDISAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDIPEFEEFWN
AILASNLVPH

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3nvt:A 345 345 0.9879 0.9449 0.9449 0.0 3nvt:B, 3tfc:A, 3tfc:B
2 5j6f:A 352 347 0.7636 0.7159 0.7262 0.0 5j6f:B
3 4grs:A 333 249 0.4121 0.4084 0.5462 6.62e-99 4c1k:A, 4c1k:B, 4c1k:C, 4c1k:D, 4c1k:E, 4c1k:F, 4c1l:A, 4c1l:B, 4grs:C, 4grs:B, 4grs:D, 1zco:A, 1zco:B
4 3pg9:A 338 252 0.4182 0.4083 0.5476 1.98e-98 3pg9:F, 3pg9:B, 3pg9:G, 3pg9:C, 3pg9:E, 3pg9:D, 3pg9:H, 1rzm:A, 1rzm:B
5 1vs1:D 271 262 0.4152 0.5055 0.5229 1.56e-81 1vs1:A, 1vs1:B, 1vs1:C
6 2a21:A 263 247 0.2333 0.2928 0.3117 7.62e-27 2a21:B, 2a2i:A, 2a2i:B, 3e0i:A, 3e0i:B, 3e12:A, 3e12:B, 2ef9:A, 2ef9:B, 1fwn:A, 1fwn:B, 1fws:A, 1fws:B, 1fwt:A, 1fwt:B, 1fww:A, 1fww:B, 1fx6:A, 1fx6:B, 1fxp:A, 1fxp:B, 1fxq:A, 1fxq:B, 1fy6:A, 1fy6:B, 1jcx:A, 1jcx:B, 1jcy:A, 1jcy:B, 1lrn:A, 1lrn:B, 1lro:A, 1lro:B, 1lrq:A, 1lrq:B, 2nwr:A, 2nwr:B, 2nws:A, 2nws:B, 2nx1:A, 2nx1:B, 2nx3:A, 2nx3:B, 2nx3:C, 2nx3:D, 2nx3:E, 2nx3:F, 2nx3:G, 2nx3:H, 2nx3:I, 2nx3:J, 2nx3:K, 2nx3:L, 2nxg:A, 2nxg:B, 2nxh:A, 2nxh:B, 2nxh:C, 2nxh:D, 2nxh:E, 2nxh:F, 2nxh:G, 2nxh:H, 2nxh:I, 2nxh:J, 2nxh:K, 2nxh:L, 2nxi:A, 2nxi:B, 2nxi:C, 2nxi:D, 2nxi:E, 2nxi:F, 2nxi:G, 2nxi:H, 2nxi:I, 2nxi:J, 2nxi:K, 2nxi:L, 1pck:A, 1pck:B, 1pcw:A, 1pcw:B, 1pe1:A, 1pe1:B, 1t8x:A, 1t8x:B, 1t96:A, 1t96:B, 1zha:A, 1zha:B, 1zji:A, 1zji:B
7 3fyo:D 261 230 0.2061 0.2605 0.2957 2.73e-20 3fyp:D
8 1g7u:A 284 268 0.2212 0.2570 0.2724 4.06e-19 1g7v:A, 1gg0:A, 1phq:A, 1phw:A, 1pl9:A, 1q3n:A, 1x6u:A
9 3und:B 284 262 0.2121 0.2465 0.2672 2.04e-15 3tmq:A, 3tmq:C, 3und:A, 3und:C, 3und:D
10 4z1d:A 256 253 0.2121 0.2734 0.2767 2.37e-15 4z1d:B
11 5gmu:B 87 78 0.1091 0.4138 0.4615 1.88e-14 5gmu:A
12 6riq:C 254 110 0.0879 0.1142 0.2636 0.19 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
13 4m9s:B 511 100 0.0636 0.0411 0.2100 0.41 2a5y:B, 2a5y:C, 8jns:A, 8jns:B, 8jns:C, 8jns:D, 8jns:E, 8jns:F, 8jo0:A, 8jo0:B, 8jo0:C, 8jo0:D, 8jo0:E, 8jo0:F, 8jo0:G, 8jol:A, 8jol:B, 3lqq:A, 3lqq:B, 3lqr:A, 3lqr:B, 4m9s:A, 4m9s:C, 4m9s:D, 4m9x:A, 4m9x:B, 4m9y:A, 4m9y:B, 4m9z:A, 4m9z:B, 4m9z:C, 4m9z:D
14 6agm:A 334 225 0.1606 0.1587 0.2356 0.53 6agm:B, 6agm:C, 6agm:D
15 3b0h:A 536 101 0.0879 0.0541 0.2871 1.5 3b0h:B
16 1of6:A 350 228 0.1424 0.1343 0.2061 3.5 1hfb:A, 1hfb:B, 1hfb:C, 1hfb:D, 1hfb:E, 1hfb:F, 1hfb:G, 1hfb:H, 1oab:A, 1oab:B, 1of6:B, 1of6:C, 1of6:D, 1of6:E, 1of6:F, 1of6:G, 1of6:H, 1of8:A, 1of8:B, 1ofa:B, 1ofa:A, 1ofb:A, 1ofb:B, 1ofo:A, 1ofo:B, 1ofq:A, 1ofq:B, 1ofq:C, 1ofq:D, 1ofr:A, 1ofr:H, 1ofr:C, 1ofr:D, 1ofr:E, 1ofr:F, 1ofr:G, 1ofr:B, 1og0:A, 1og0:B, 1og0:C, 1og0:D, 1og0:E, 1og0:F, 1og0:G, 1og0:H
17 8slg:A 429 80 0.0636 0.0490 0.2625 4.0
18 1kfl:A 350 251 0.1606 0.1514 0.2112 4.5 5cks:A, 5cks:B, 5cks:C, 5cks:D, 8e0s:A, 8e0s:B, 8e0s:C, 8e0s:D, 8e0t:B, 8e0t:C, 8e0v:A, 8e0v:B, 8e0v:C, 8e0v:D, 8e0x:A, 8e0x:B, 8e0x:C, 8e0x:D, 8e0y:C, 1gg1:A, 1gg1:B, 1gg1:C, 1gg1:D, 1kfl:B, 1kfl:C, 1kfl:D, 1kfl:E, 1kfl:F, 1kfl:G, 1kfl:H, 1n8f:A, 1n8f:B, 1n8f:C, 1n8f:D, 1qr7:A, 1qr7:B, 1qr7:C, 1qr7:D, 7rud:B, 7rud:C, 7rud:D, 7rue:A, 7rue:B, 7rue:C, 7rue:D
19 8slg:B 447 80 0.0636 0.0470 0.2625 4.8 8slf:B, 8u2q:B
20 2f8j:A 335 66 0.0667 0.0657 0.3333 5.0 2f8j:B, 2f8j:C, 2f8j:D, 1h1c:A, 1h1c:B, 1h1c:C, 1h1c:D, 1uu0:A, 1uu0:B, 1uu0:C, 1uu0:D, 1uu1:A, 1uu1:B, 1uu1:C, 1uu1:D, 1uu2:A, 1uu2:B
21 4ud8:A 500 70 0.0667 0.0440 0.3143 5.5 4ud8:B
22 8u2q:A 398 80 0.0636 0.0528 0.2625 5.6 8slf:A
23 8wuw:H 529 77 0.0667 0.0416 0.2857 5.8 8wuw:A, 8wuw:B, 8wuw:I, 8wuw:C, 8wuw:J, 8wuw:D, 8wuw:K, 8wuw:E, 8wuw:L, 8wuw:F, 8wuw:M, 8wuw:G, 8wuw:N, 8wux:A, 8wux:H, 8wux:B, 8wux:I, 8wux:C, 8wux:J, 8wux:D, 8wux:K, 8wux:E, 8wux:L, 8wux:F, 8wux:M, 8wux:G, 8wux:N
24 1zun:B 394 117 0.1030 0.0863 0.2906 6.0
25 3tqk:A 341 255 0.1667 0.1613 0.2157 6.0
26 3ss7:X 437 73 0.0636 0.0481 0.2877 6.4 3ss9:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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