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BioLiP
>protein
NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2h1k:B 60 60 1.0000 1.0000 1.0000 2.35e-38 2h1k:A
2 2r5z:A 75 58 0.7000 0.5600 0.7241 3.15e-24 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
3 1ahd:P 68 58 0.7000 0.6176 0.7241 3.26e-24
4 1puf:A 77 57 0.6333 0.4935 0.6667 3.44e-21 2lp0:A
5 8eml:A 58 57 0.6167 0.6379 0.6491 6.27e-21 8eml:B
6 4uus:A 67 55 0.6333 0.5672 0.6909 4.97e-20 4uus:E
7 1jgg:A 57 57 0.6167 0.6491 0.6491 7.40e-20 1jgg:B
8 1b72:A 68 56 0.6333 0.5588 0.6786 9.31e-20
9 4cyc:A 66 56 0.6333 0.5758 0.6786 4.74e-19 1b8i:A
10 5zjr:A 64 57 0.6000 0.5625 0.6316 2.05e-18 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
11 2me6:A 71 58 0.5500 0.4648 0.5690 5.63e-17
12 6es3:K 72 54 0.5167 0.4306 0.5741 1.72e-15 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
13 2ld5:A 67 58 0.4500 0.4030 0.4655 2.44e-14
14 8pna:A 67 58 0.4500 0.4030 0.4655 2.66e-14 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
15 3a01:A 78 58 0.4500 0.3462 0.4655 1.09e-13 3a01:E
16 5eea:G 63 57 0.4333 0.4127 0.4561 1.25e-13 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
17 2lkx:A 68 59 0.4833 0.4265 0.4915 2.81e-13
18 1ig7:A 58 57 0.4667 0.4828 0.4912 5.11e-13
19 1zq3:P 68 56 0.4167 0.3676 0.4464 5.74e-13
20 3a01:F 61 59 0.5000 0.4918 0.5085 1.17e-12 3a01:B, 3lnq:A
21 4rdu:D 62 57 0.4333 0.4194 0.4561 2.26e-12 4rdu:A, 4xrs:I, 4xrs:G
22 3rkq:A 58 56 0.4333 0.4483 0.4643 2.76e-12 3rkq:B
23 8osb:E 62 58 0.4667 0.4516 0.4828 3.13e-11
24 1nk2:P 77 56 0.4167 0.3247 0.4464 8.19e-11 1nk3:P
25 5flv:M 229 52 0.4167 0.1092 0.4808 1.81e-10 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
26 1fjl:A 65 58 0.4333 0.4000 0.4483 3.27e-10 1fjl:B, 1fjl:C
27 6m3d:C 108 56 0.4333 0.2407 0.4643 5.07e-10 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
28 6m3d:C 108 48 0.3667 0.2037 0.4583 1.91e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
29 3cmy:A 60 59 0.4167 0.4167 0.4237 1.37e-09
30 4rbo:A 55 53 0.3667 0.4000 0.4151 4.58e-08 4rbo:D
31 4qtr:C 57 55 0.4000 0.4211 0.4364 5.70e-08 4qtr:A, 4qtr:B, 4qtr:D
32 9b8u:B 66 50 0.3500 0.3182 0.4200 2.97e-07 9b8u:A, 9b8u:C, 9b8u:D
33 8ejo:A 56 54 0.3333 0.3571 0.3704 8.17e-06 8ejo:B, 8ejp:A, 8ejp:B
34 6e8c:A 135 55 0.3667 0.1630 0.4000 3.18e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 6e8c:A 135 48 0.2667 0.1185 0.3333 0.045 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
36 5hod:A 61 57 0.3500 0.3443 0.3684 2.63e-04 5hod:D
37 8ik5:C 67 57 0.3500 0.3134 0.3684 6.76e-04 8ike:C, 8ilw:C
38 1gt0:C 137 43 0.2833 0.1241 0.3953 0.008 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
39 1lfu:P 82 51 0.2667 0.1951 0.3137 0.020 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
40 3l1p:A 147 57 0.3167 0.1293 0.3333 0.39 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
41 3d1n:I 150 53 0.2667 0.1067 0.3019 0.46 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
42 7xrc:C 134 43 0.2667 0.1194 0.3721 0.58 2xsd:C
43 4egc:A 539 34 0.2167 0.0241 0.3824 0.65
44 8bx1:A 127 43 0.2500 0.1181 0.3488 0.91
45 1le8:A 53 42 0.2000 0.2264 0.2857 1.1 1akh:A, 1yrn:A
46 3ib9:A 521 48 0.2667 0.0307 0.3333 1.2 3ib9:B, 1xny:A, 1xny:B
47 5wc9:A 136 54 0.2833 0.1250 0.3148 1.2 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
48 8g8e:X 140 57 0.3000 0.1286 0.3158 3.5 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
49 7bkb:G 568 32 0.1500 0.0158 0.2812 4.8 7bkb:g, 7bkc:G, 7bkc:g
50 5u1g:D 211 40 0.2333 0.0664 0.3500 5.4 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
51 7ybu:A 670 45 0.2167 0.0194 0.2889 5.6 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
52 4a37:B 376 24 0.1667 0.0266 0.4167 9.0 4a37:A, 4a38:A, 4a38:B, 4a39:A, 4a39:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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