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BioLiP
>protein
NKRNVELLATLKENLERAQGNTLIRLALKELG

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v7p:BI 32 32 1.0000 1.0000 1.0000 2.58e-15 4v7p:CI, 4v83:BI, 4v83:DI, 4v84:DI
2 6qnr:38 84 52 1.0000 0.3810 0.6154 1.45e-10
3 5a9z:AI 153 64 0.9688 0.2026 0.4844 1.22e-07 5aa0:AI, 6gsl:38, 5hau:1J, 5hau:2J, 5imq:2, 5imr:2, 5j8b:J, 6qnq:38, 4v6f:DY, 4v7j:AJ, 4v7j:BJ, 4v7k:AJ, 4v7k:BJ, 4w2e:J, 4wpo:AK, 4wpo:CK, 4wqf:AK, 4wqf:CK, 4wqu:AK, 4wqu:CK, 4wqy:AK, 4wqy:CK, 5zlu:e
4 2fja:A 642 25 0.3750 0.0187 0.4800 1.8 2fja:C, 2fjb:A, 2fjb:C, 2fjd:A, 2fjd:C, 2fje:A, 2fje:C, 1jnr:A, 1jnr:C, 1jnz:A, 1jnz:C
5 6sga:F3 888 22 0.3125 0.0113 0.4545 9.9 7pub:F3, 6sgb:F3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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