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BioLiP
>protein
NKLYKNIETDTHSVYILLNLTLTEYKIISFMIDQPHKVFTRGELMNHCMNDSDALERTVDSHVSKLRKKLEEQGIFQMLI
NVRGVGYRLDNPLAV

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5x5l:E 98 99 0.9474 0.9184 0.9091 4.13e-57 5x5l:B, 5x5l:H, 5x5l:A
2 2z33:A 104 75 0.3158 0.2885 0.4000 3.06e-14 1gxp:A, 1gxp:B, 1gxp:E, 1gxp:F
3 4b09:A 218 76 0.3263 0.1422 0.4079 3.57e-12 4b09:B, 4b09:C, 4b09:D, 4b09:E, 4b09:F, 4b09:G, 4b09:I, 4b09:K
4 8hig:A 98 89 0.3053 0.2959 0.3258 1.30e-08 8hig:B, 8hml:A, 8hml:B
5 7e1b:A 209 73 0.3053 0.1388 0.3973 2.03e-08 7e1b:B, 7e1b:C, 7e1b:H, 7e1b:D, 7e1b:E, 7e1b:F, 7e1b:G, 7e1h:A, 7e1h:B, 7e1h:E
6 8hih:O 217 77 0.2947 0.1290 0.3636 3.38e-07 8hih:P, 8hih:N, 8hih:Q
7 2oqr:A 226 75 0.2526 0.1062 0.3200 4.67e-07
8 6lxn:A 110 72 0.2316 0.2000 0.3056 2.62e-06 6lxn:B
9 2gwr:A 225 76 0.2632 0.1111 0.3289 1.45e-05 3nhz:B, 3nhz:C, 3nhz:D
10 1ys6:B 227 73 0.2421 0.1013 0.3151 1.56e-04 1ys6:A, 1ys7:A, 1ys7:B
11 6cqg:A 98 76 0.2526 0.2449 0.3158 0.004
12 4zcf:A 616 78 0.2211 0.0341 0.2692 0.38 4zcf:B
13 4nhj:A 102 36 0.1579 0.1471 0.4167 1.1 4nhj:B
14 7x7q:A 185 31 0.1053 0.0541 0.3226 2.9 7x5a:A, 7x5a:C, 7x5a:F, 7x5a:B, 7x5a:G, 7x5a:D, 7x7q:C, 7x7q:F, 7x7q:D, 7x7q:E, 7x7q:H, 7x7q:B
15 3dls:A 285 50 0.1684 0.0561 0.3200 2.9 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
16 7bjt:A 727 81 0.2105 0.0275 0.2469 3.5 7bjt:B, 7bm6:A, 7bm6:B
17 3a9v:A 528 29 0.1158 0.0208 0.3793 3.8 3ni2:A
18 6hr5:A 376 61 0.1684 0.0426 0.2623 3.9
19 8tlq:A 1283 48 0.1895 0.0140 0.3750 4.2 8tlt:A, 6v93:A
20 5ief:A 858 37 0.1368 0.0152 0.3514 4.4 5h9o:A, 5h9o:C, 5hjo:A, 5hjo:C, 5hjr:A, 5hjr:C, 5ied:A, 5iee:A, 5ieg:A, 7jty:A, 7jty:C, 7k9n:A, 7k9n:C, 7k9o:A, 7k9o:C, 7k9q:A, 7k9q:C, 7k9t:A, 7k9t:C, 7kad:A, 7kad:C, 7kb6:A, 7kb6:C, 7kb8:A, 7kb8:C, 7kbj:A, 7kbj:C, 7kbr:A, 7kbr:C, 7kry:A, 7kry:C
21 6jwz:B 565 17 0.0842 0.0142 0.4706 4.5 6jwr:A, 6jwr:B, 6jwv:A, 6jww:A, 6jww:B, 6jwx:A, 6jwy:A, 6kcl:A, 6kcm:A
22 2dkc:A 536 41 0.1579 0.0280 0.3659 7.8 2dkc:B, 2dkd:A, 2dkd:B
23 6kcl:B 545 17 0.0842 0.0147 0.4706 8.2 6jwu:B, 6jwv:B, 6jwx:B, 6jwy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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