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BioLiP
>protein
NKITCTQDFLHQYFVTERVSIQFGLNNKTVKRINKDEFDKAVNCIMSWTN

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8uru:F 51 50 1.0000 0.9804 1.0000 1.42e-32 8urq:F
2 5wti:Z 982 22 0.1800 0.0092 0.4091 1.1
3 4cyj:B 412 27 0.1800 0.0218 0.3333 3.1 4cyi:A, 4cyi:B, 4cyi:C, 4cyi:D, 4cyi:E, 4cyi:F, 4cyi:G, 4cyi:H, 4cyj:A, 4cyj:C, 4cyj:D
4 7uws:G 382 31 0.2600 0.0340 0.4194 3.2 7uml:A
5 7uws:E 422 31 0.2600 0.0308 0.4194 3.2 6bjy:A, 6bjy:B, 6bjy:C, 6bjy:D, 6bjy:E, 2gic:A, 2gic:B, 2gic:C, 2gic:D, 2gic:E, 3hhz:K, 3hhz:L, 3hhz:M, 3hhz:N, 3hhz:O, 3pmk:A, 3pmk:D, 3pmk:B, 3pmk:C, 3ptx:A, 3ptx:B, 3ptx:C, 3ptx:D, 3ptx:E, 3pu0:A, 3pu0:B, 3pu0:C, 3pu0:D, 3pu0:E, 3pu1:A, 3pu1:B, 3pu1:C, 3pu1:D, 3pu1:E, 3pu4:A, 3pu4:B, 3pu4:C, 3pu4:D, 3pu4:E, 5uk4:P, 5uk4:Q, 5uk4:N, 5uk4:M, 5uk4:O, 5uk4:R, 5uk4:S, 5uk4:T, 5uk4:K, 5uk4:L, 5uk4:B, 5uk4:C, 5uk4:D, 5uk4:E, 5uk4:F, 5uk4:G, 5uk4:H, 5uk4:I, 5uk4:J, 5uk4:A, 5ukb:D, 5ukb:C, 5ukb:B, 5ukb:A, 5ukb:E, 7umk:A, 7uws:A, 7uws:B, 7uws:C, 7uws:D, 7uws:F, 2wyy:A, 2wyy:C, 2wyy:D, 2wyy:F, 2wyy:H, 2wyy:I, 2wyy:J, 2wyy:K, 2wyy:L, 2wyy:M
6 4ic7:A 355 19 0.1800 0.0254 0.4737 4.4 4b99:A, 5byy:A, 5byz:A, 6hkm:A, 6hkn:A, 4ic7:D, 5o7i:A, 7pus:AAA, 4zsg:A, 4zsj:A, 4zsl:A
7 7f4l:B 130 59 0.3400 0.1308 0.2881 6.0 7f4m:B, 7f4n:B
8 7dh0:G 123 37 0.2200 0.0894 0.2973 6.3 7dkf:G2, 8ic2:Q, 8ic3:Q
9 6z1p:Ad 374 16 0.1600 0.0214 0.5000 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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