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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYA
SYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFII
YDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRK
GDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYK
QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSI
DANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIK

The query sequence (length=466) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vd8:A 466 466 1.0000 1.0000 1.0000 0.0 8vdc:A
2 2jes:A 370 243 0.1245 0.1568 0.2387 1.45e-05 2jes:C, 2jes:E, 2jes:G, 2jes:I, 2jes:K, 2jes:M, 2jes:O, 2jes:Q, 2jes:S, 2jes:U, 2jes:W, 2jes:Y
3 5lnx:D 374 213 0.1052 0.1310 0.2300 0.21 5lnx:A, 5lnx:B, 5lnx:C, 5lnx:E, 5lnx:F, 5lnx:G, 5lnx:H
4 7nii:C 565 147 0.0858 0.0708 0.2721 1.4 7nii:B, 7nii:G, 7nii:H
5 1mx9:D 533 54 0.0408 0.0356 0.3519 2.8 2dqy:A, 2dqy:B, 2dqy:C, 2dqz:A, 2dqz:B, 2dqz:C, 2dr0:A, 2dr0:B, 2dr0:C, 2h7c:A, 2h7c:F, 2h7c:B, 2h7c:D, 2h7c:C, 2h7c:E, 2hrq:A, 2hrq:B, 2hrq:C, 2hrq:D, 2hrq:E, 2hrq:F, 2hrr:A, 2hrr:B, 2hrr:C, 1mx1:A, 1mx1:B, 1mx1:C, 1mx1:D, 1mx1:E, 1mx1:F, 1mx5:A, 1mx5:B, 1mx5:C, 1mx5:D, 1mx5:E, 1mx5:F, 1mx9:A, 1mx9:B, 1mx9:C, 1mx9:E, 1mx9:F, 1mx9:G, 1mx9:H, 1mx9:I, 1mx9:J, 1mx9:K, 1mx9:L, 1ya4:A, 1ya4:B, 1ya4:C, 1ya8:A, 1ya8:B, 1ya8:C, 1yah:A, 1yah:B, 1yah:C, 1yaj:A, 1yaj:B, 1yaj:D, 1yaj:E, 1yaj:F, 1yaj:G, 1yaj:H, 1yaj:I, 1yaj:J, 1yaj:K, 1yaj:L
6 7s9w:B 529 34 0.0279 0.0246 0.3824 7.4
7 8k7x:A 673 96 0.0579 0.0401 0.2812 8.4 8k7y:A, 8k7y:E
8 7ase:f 1523 77 0.0408 0.0125 0.2468 9.5 7ask:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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