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BioLiP
>protein
NEQLAKQKGCMACHDLKAKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQK

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5xec:C 80 80 1.0000 1.0000 1.0000 6.70e-55 5xed:C
2 351c:A 82 79 0.8875 0.8659 0.8987 9.69e-48 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
3 1cor:A 82 79 0.6625 0.6463 0.6709 2.57e-34 6kq1:A, 6kq1:B
4 5aur:A 83 83 0.6750 0.6506 0.6506 8.85e-32 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
5 1cch:A 82 79 0.6500 0.6341 0.6582 2.21e-31 1fi3:A, 2i8f:A
6 5xec:A 82 79 0.5625 0.5488 0.5696 7.07e-27 5xed:A
7 1a56:A 81 81 0.5500 0.5432 0.5432 4.84e-26 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
8 2d0s:A 79 81 0.4750 0.4810 0.4691 1.68e-22
9 4xxl:A 92 80 0.3250 0.2826 0.3250 4.42e-08
10 3x15:A 87 85 0.3375 0.3103 0.3176 2.99e-06 3x15:G, 3x15:D, 3x15:J, 2zxy:A
11 3cp5:A 116 22 0.1250 0.0862 0.4545 0.018 6cuk:A, 6cun:A
12 5z25:A 96 32 0.1500 0.1250 0.3750 0.049
13 1fj0:A 114 63 0.2750 0.1930 0.3492 0.069 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
14 2i6j:A 161 35 0.2000 0.0994 0.4571 0.61 2dxp:A, 2i6m:A, 2i6o:A, 2i6p:A, 7mpc:A, 7mpd:A
15 1qn2:A 99 26 0.1375 0.1111 0.4231 1.8 1qn2:B, 1qn2:C
16 4v6w:CK 158 44 0.1625 0.0823 0.2955 2.3
17 3o5c:A 308 13 0.1000 0.0260 0.6154 3.9 3o5c:B, 3o5c:C, 3o5c:D
18 2zbo:A 86 74 0.2500 0.2326 0.2703 4.6 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
19 7aor:aw 160 25 0.1375 0.0688 0.4400 5.1
20 8pv1:LK 158 42 0.1750 0.0886 0.3333 5.8 8i9t:LK, 8i9v:LK, 8i9w:LK, 8i9x:LK, 8i9y:LK, 8i9z:LK, 8ia0:LK, 7olc:LK, 7old:LK, 8oo0:LK, 8pv2:LK, 8pv3:LK, 8pv4:LK, 8pv5:LK, 8pv6:LK, 8pv7:LK, 8pv8:LK, 8pvk:LK, 8pvl:LK, 7z3n:LK, 7z3o:LK
21 8idt:y 165 42 0.1750 0.0848 0.3333 5.8 7a01:M2, 5a8l:G, 5aj0:Aq, 9bdn:AL12, 9bdp:AL12, 8bhf:f1, 8bpo:r2, 8btk:Bt, 6d90:t, 6d9j:t, 9f1b:Bt, 9f1c:Bt, 9f1d:Bt, 8fkr:BA, 8fks:BA, 8fkt:BA, 8fku:BA, 8fkv:BA, 8fkw:BA, 8fkx:BA, 8fky:BA, 8fkz:BA, 8fl0:BA, 8fl2:BA, 8fl3:BA, 8fl4:BA, 8fl6:BA, 8fl7:BA, 8fl9:BA, 8fla:BA, 8flb:BA, 8flc:BA, 6frk:4, 6ftg:t, 6fti:t, 6ftj:t, 8g5z:LK, 8g60:LK, 8g6j:LK, 6gz3:Aq, 6gz4:Aq, 6gz5:Aq, 6hcf:t3, 6hcj:u3, 6hcm:t3, 6hcq:u3, 8idy:y, 8ine:y, 8inf:y, 8ink:y, 8ipd:y, 8ipx:y, 8ipy:y, 8ir1:y, 8ir3:y, 3j7p:K, 3j92:t, 3jag:t, 3jah:t, 3jai:t, 3jaj:K, 3jan:K, 8k2c:Lt, 7ls1:k, 7ls2:k, 5lzs:t, 5lzt:t, 5lzu:t, 5lzv:t, 5lzw:t, 5lzx:t, 5lzy:t, 5lzz:t, 6mtd:t, 6mte:t, 7nwg:u3, 7nwh:t, 7nwi:t, 7o7y:Bt, 7o7z:Bt, 7o80:Bt, 7o81:Bt, 6olg:Aq, 8p2k:Bt, 8q87:Bt, 6r5q:t, 6r6g:t, 6r6p:t, 6r7q:t, 8scb:t, 6sgc:t2, 6t59:t3, 4v5z:Bi, 4v6x:CK, 8xsx:LK, 8xsy:Lt, 8xsz:Lt, 8yoo:Lt, 8yop:Lt, 6zm7:Lt, 6zme:Lt, 6zmi:Lt, 6zmo:Lt, 6zvk:M2
22 2xn9:C 215 41 0.1750 0.0651 0.3415 6.0 1ewc:A, 1hxy:D
23 7dwx:A 605 19 0.1125 0.0149 0.4737 9.1 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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