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BioLiP
>protein
NEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1weu:A 91 51 1.0000 0.5604 1.0000 1.73e-35 3c6w:A, 3c6w:C, 2k1j:A, 2m1r:A, 2pnx:A, 2pnx:C, 2vnf:A, 2vnf:C, 1wen:A
2 1wes:A 71 49 0.7647 0.5493 0.7959 1.20e-26 2g6q:A
3 2qic:A 51 48 0.7451 0.7451 0.7917 7.75e-26
4 1x4i:A 70 46 0.6471 0.4714 0.7174 9.57e-24 7zmx:A, 7zmx:B
5 2jmi:A 60 48 0.5294 0.4500 0.5625 3.00e-18 2jmj:A
6 2mum:A 50 46 0.4902 0.5000 0.5435 4.08e-17
7 2k16:A 75 38 0.3333 0.2267 0.4474 2.70e-05 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
8 6j2p:A 98 54 0.3922 0.2041 0.3704 4.57e-05 6j2p:B, 6j2p:D, 6j2p:C
9 4gnd:C 107 34 0.3137 0.1495 0.4706 7.78e-05 4gnd:A, 4gne:A, 4gnf:A, 4gng:A, 4gng:D
10 2naa:A 94 34 0.2745 0.1489 0.4118 5.76e-04
11 9c0o:A 63 55 0.3529 0.2857 0.3273 0.001
12 6ryr:W 708 39 0.2941 0.0212 0.3846 0.001 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
13 5b73:A 313 23 0.2157 0.0351 0.4783 0.003 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
14 7mju:A 184 34 0.2745 0.0761 0.4118 0.007 5dag:A, 5dah:B, 5dah:A
15 2puy:B 60 39 0.3137 0.2667 0.4103 0.008 2puy:A
16 2yql:A 56 38 0.3137 0.2857 0.4211 0.021
17 2miq:A 94 49 0.3725 0.2021 0.3878 0.030
18 1wem:A 76 55 0.3922 0.2632 0.3636 0.12 4l7x:A, 2m3h:A
19 5vab:A 54 42 0.2941 0.2778 0.3571 0.17
20 2l5u:A 61 40 0.2745 0.2295 0.3500 0.25
21 6q3m:C 219 39 0.2941 0.0685 0.3846 0.31 6q3m:A, 6q3m:B
22 6guu:B 204 39 0.2941 0.0735 0.3846 0.36 6guu:A
23 8ge0:A 188 36 0.2941 0.0798 0.4167 0.37 8gdx:A, 8ge0:B, 8ge0:C
24 1tz3:A 299 14 0.1569 0.0268 0.5714 0.54 1tz6:A, 1tz6:B
25 3n9m:A 503 36 0.3137 0.0318 0.4444 0.67 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
26 1mm3:A 61 39 0.2941 0.2459 0.3846 0.89
27 3kv4:A 432 54 0.3922 0.0463 0.3704 0.90 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A
28 5wlf:A 60 54 0.3529 0.3000 0.3333 1.00 5wle:A
29 6fhq:A 58 14 0.1765 0.1552 0.6429 1.1 6fhq:B, 6fi1:A, 6fi1:B, 4qf3:A, 4qf3:B
30 6r1b:B 395 27 0.2353 0.0304 0.4444 1.3 6r1b:A, 6r1b:C, 6r1b:D
31 6u04:A 168 23 0.1961 0.0595 0.4348 1.5 5erc:A
32 1ydn:A 283 16 0.1765 0.0318 0.5625 1.9 1ydn:B, 1ydn:C, 1ydn:D
33 8bpb:C 126 22 0.1961 0.0794 0.4545 3.3 8bpc:C
34 5z8l:A 204 27 0.2157 0.0539 0.4074 3.7 5z8n:A, 5z8n:B, 5z8n:C
35 8f8y:B 433 55 0.3725 0.0439 0.3455 3.9 8f8y:A, 8f8z:A, 8f8z:B, 3kqi:A, 7m10:A, 3pu3:A, 3pu3:B, 3pu8:B, 3pu8:A, 3pua:A, 3pus:A, 3pus:B
36 8bpa:C 213 22 0.1961 0.0469 0.4545 4.2 8c60:C
37 2l43:A 80 23 0.1765 0.1125 0.3913 4.6 2ku3:A
38 8dmu:A 476 8 0.1373 0.0147 0.8750 4.9 8dmu:B, 8dmu:C, 8dmu:D
39 2ma5:A 61 26 0.1961 0.1639 0.3846 4.9
40 1wep:A 79 50 0.3137 0.2025 0.3200 5.5
41 4qiw:B 1069 26 0.1961 0.0094 0.3846 5.9 4qiw:J
42 6kf3:B 1114 26 0.1961 0.0090 0.3846 5.9 9bct:B, 9bcu:B, 6kf4:B, 6kf9:B
43 8i3x:A 60 23 0.1569 0.1333 0.3478 6.4 8i3x:B
44 2q8g:A 368 18 0.1373 0.0190 0.3889 7.5 2q8h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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