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BioLiP
>protein
NEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQE

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1weu:A 91 52 0.9231 0.5275 0.9231 9.97e-33 3c6w:A, 3c6w:C, 2k1j:A, 2m1r:A, 2pnx:A, 2pnx:C, 2vnf:A, 2vnf:C, 1wen:A
2 1wes:A 71 49 0.7885 0.5775 0.8367 4.85e-28 2g6q:A
3 2qic:A 51 51 0.7692 0.7843 0.7843 1.94e-26
4 1x4i:A 70 50 0.6538 0.4857 0.6800 2.03e-24 7zmx:A, 7zmx:B
5 2jmi:A 60 52 0.5577 0.4833 0.5577 1.00e-18 2jmj:A
6 2mum:A 50 48 0.5192 0.5400 0.5625 2.48e-17
7 4gnd:C 107 34 0.3269 0.1589 0.5000 1.03e-05 4gnd:A, 4gne:A, 4gnf:A, 4gng:A, 4gng:D
8 2naa:A 94 34 0.2885 0.1596 0.4412 2.41e-05
9 6j2p:A 98 53 0.4038 0.2143 0.3962 3.16e-05 6j2p:B, 6j2p:D, 6j2p:C
10 2k16:A 75 39 0.3077 0.2133 0.4103 4.01e-04 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
11 2miq:A 94 52 0.4038 0.2234 0.4038 0.001
12 2l5u:A 61 41 0.3462 0.2951 0.4390 0.002
13 2puy:B 60 38 0.3077 0.2667 0.4211 0.002 2puy:A
14 9c0o:A 63 56 0.3462 0.2857 0.3214 0.003
15 2yql:A 56 41 0.3077 0.2857 0.3902 0.003
16 5b73:A 313 21 0.2115 0.0351 0.5238 0.004 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
17 2ke1:A 66 40 0.3462 0.2727 0.4500 0.019 2kft:A, 1xwh:A
18 6q3m:C 219 39 0.3077 0.0731 0.4103 0.12 6q3m:A, 6q3m:B
19 7mju:A 184 34 0.2308 0.0652 0.3529 0.14 5dag:A, 5dah:B, 5dah:A
20 6guu:B 204 39 0.3077 0.0784 0.4103 0.15 6guu:A
21 6ryr:W 708 39 0.3077 0.0226 0.4103 0.16 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
22 8bpb:C 126 41 0.2885 0.1190 0.3659 0.19 8bpc:C
23 5vab:A 54 40 0.2885 0.2778 0.3750 0.23
24 6fhq:A 58 17 0.1731 0.1552 0.5294 0.28 6fhq:B, 6fi1:A, 6fi1:B, 4qf3:A, 4qf3:B
25 8bpa:C 213 38 0.2885 0.0704 0.3947 0.30 8c60:C
26 1mm3:A 61 39 0.3077 0.2623 0.4103 0.61
27 7klo:A 59 17 0.1923 0.1695 0.5882 0.86 7klr:A
28 5wlf:A 60 56 0.3846 0.3333 0.3571 0.94 5wle:A
29 6oie:B 111 48 0.3077 0.1441 0.3333 1.2 6oie:A, 5u2j:B, 5u2j:A
30 4lk9:A 126 36 0.3077 0.1270 0.4444 1.2 5b75:A, 5b76:A, 5b77:A, 5b78:A, 4ljn:A, 4lka:A, 4llb:A, 4llb:B, 2ln0:A, 6lsb:A, 3v43:A
31 6ieu:A 170 38 0.3077 0.0941 0.4211 1.9 6iet:A
32 1ydn:A 283 16 0.1731 0.0318 0.5625 2.0 1ydn:B, 1ydn:C, 1ydn:D
33 7yi0:F 120 40 0.3077 0.1333 0.4000 2.4
34 3n9m:A 503 37 0.3077 0.0318 0.4324 2.9 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
35 8w9c:F 156 40 0.3077 0.1026 0.4000 2.9 8hxx:P, 8hy0:P, 8jho:P, 8w9d:F, 8w9e:F, 8w9f:F
36 8ihn:M 357 40 0.3077 0.0448 0.4000 3.0 8kd4:E
37 1wem:A 76 55 0.3462 0.2368 0.3273 3.1 4l7x:A, 2m3h:A
38 8kd6:E 301 40 0.3077 0.0532 0.4000 3.3 8kd2:E
39 7yi2:D 321 40 0.3077 0.0498 0.4000 3.3 7yi0:D, 7yi3:D, 7yi4:D, 7yi5:D
40 6u04:A 168 24 0.1731 0.0536 0.3750 3.4 5erc:A
41 8hxx:N 375 40 0.3077 0.0427 0.4000 3.7 8hxy:N, 8hy0:N, 8i3f:B, 8jho:N, 8tof:G, 8w9c:E, 8w9d:E, 8w9e:E, 8w9f:E
42 2mny:A 55 17 0.1538 0.1455 0.4706 4.3 2mnz:A
43 1tz3:A 299 14 0.1346 0.0234 0.5000 4.9 1tz6:A, 1tz6:B
44 9atn:A 98 23 0.1923 0.1020 0.4348 5.4
45 5ijl:A 943 20 0.1538 0.0085 0.4000 5.9
46 8ppt:B 1191 20 0.1538 0.0067 0.4000 5.9 8ppu:B, 8ppv:B, 6t8h:B
47 8ge0:A 188 36 0.2692 0.0745 0.3889 7.2 8gdx:A, 8ge0:B, 8ge0:C
48 3o36:A 184 38 0.2885 0.0815 0.3947 7.4 7b9x:A, 5h1t:A, 5h1t:B, 5h1t:C, 5h1t:D, 5h1u:B, 5h1u:A, 5h1u:C, 5h1u:D, 5h1v:A, 5h1v:B, 3o33:A, 3o33:B, 3o33:C, 3o33:D, 3o34:A, 3o35:B, 3o35:A, 3o36:B, 3o37:A, 3o37:B, 3o37:C, 3o37:D, 4yab:A, 4yab:B, 4yad:A, 4yad:B, 4yat:A, 4yat:B, 4yax:A, 4yax:B, 4ybm:A, 4ybm:B, 4ybs:A, 4ybt:A, 4yc9:A, 4zql:A, 4zql:B
49 5z0f:A 279 22 0.1731 0.0323 0.4091 7.8 2ahk:A, 2ahl:A, 3aws:A, 3awt:A, 3awu:A, 3awv:A, 3aww:A, 3awx:A, 3awy:A, 3awz:A, 3ax0:A, 7cit:A, 7ciy:A, 1wx2:A, 1wx4:A, 5z0d:A, 5z0e:A, 5z0g:A, 5z0h:A, 5z0i:A, 5z0j:A, 5z0k:A, 5z0l:A, 5z0m:A, 2zmx:A, 2zmy:A, 2zmz:A, 2zwd:A, 2zwe:A, 2zwf:A, 2zwg:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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