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BioLiP
>protein
NELPPENAYRILESGPIVLVSTRGADGRANLMTMGFHMMMQHEPPLVGAIIGPWDYSHQALSETGECVLAVPTVDLAETV
VDIGNCSGDALDKFGHFGLTPVPAQTVDAPLVRQCWANLECRVVDDGWARRYNLWVLEVQRIWIDTARKETRLIHHQGDG
RFSVDGDTLDLGERMTKWR

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3e4v:A 179 179 1.0000 1.0000 1.0000 6.15e-134 3e4v:B
2 3hmz:A 191 177 0.2626 0.2461 0.2655 5.57e-13
3 2d5m:A 183 109 0.1788 0.1749 0.2936 1.16e-12
4 2r6v:A 182 124 0.2011 0.1978 0.2903 5.83e-12 3zoc:A, 3zod:A, 3zog:A
5 3bnk:B 187 110 0.1844 0.1765 0.3000 9.51e-12 3bnk:A
6 1eje:A 192 123 0.1676 0.1562 0.2439 3.04e-06
7 6ofr:A 758 58 0.1061 0.0251 0.3276 0.010
8 3fge:A 198 111 0.1397 0.1263 0.2252 0.046
9 1usc:A 178 104 0.1285 0.1292 0.2212 0.55 1usc:B, 1usf:A, 1usf:B, 3zoe:A, 3zoe:B, 3zof:A, 3zof:B, 3zoh:A, 3zoh:B, 3zoh:C, 3zoh:D
10 1rz0:A 153 130 0.1788 0.2092 0.2462 1.0 1rz0:B, 1rz0:C, 1rz0:D, 1rz0:E, 1rz0:F, 1rz0:G, 1rz0:H, 1rz1:A, 1rz1:B, 1rz1:C, 1rz1:D, 1rz1:E, 1rz1:F, 1rz1:G, 1rz1:H
11 4p5h:L 286 25 0.0670 0.0420 0.4800 2.8 4p5h:M, 4p5h:N, 4p5h:O, 4p5h:A, 4p5h:B, 4p5h:C, 4p5h:D, 4p5h:E, 4p5h:F, 4p5h:G, 4p5h:H, 4p5h:I, 4p5h:J, 4p5h:K
12 4ub9:A 467 75 0.1006 0.0385 0.2400 4.0 4ub9:B, 4ub9:C, 4ub9:D, 4ub9:E, 4ub9:F, 4ub9:G, 4wgx:A
13 1ci3:M 249 81 0.1229 0.0884 0.2716 4.9
14 7z8n:A 292 20 0.0615 0.0377 0.5500 5.0 7z8n:B
15 1pfb:A 55 21 0.0615 0.2000 0.5238 6.1 1pdq:A
16 5e12:A 202 91 0.1229 0.1089 0.2418 7.5 5e0y:A
17 8guy:F 835 26 0.0447 0.0096 0.3077 8.6 6ce7:P, 6ce9:M, 6ce9:P, 6ceb:M, 6ceb:P, 8guy:E, 6hn5:E, 5j3h:E, 7kd6:E, 7kd6:K, 7kd6:Q, 7kd6:W, 5kqv:E, 5kqv:F, 7mqo:F, 7mqo:E, 7mqr:E, 7mqr:F, 4oga:E, 7pg0:B, 7pg2:B, 7pg3:B, 7pg4:B, 7qid:C, 7sl3:A, 7sl3:B, 6sof:A, 6sof:C, 7u6e:F, 7u6e:E, 6vep:E, 6vep:K, 6vep:Q, 6vep:W, 6veq:K, 6veq:E, 3w11:E, 3w12:E, 3w13:E, 4xss:E, 4xst:E, 7yq3:F, 7yq3:E, 7yq4:E, 7yq4:F, 7yq5:F
18 7yq5:E 799 26 0.0447 0.0100 0.3077 8.7 7pg0:A, 7pg2:A, 7pg3:A, 7pg4:A, 7sl4:B, 7yq6:E, 7yq6:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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