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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NECLGTIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYW
FCDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGM
YLMMSVDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVT
FGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIP

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4e4z:A 312 311 1.0000 0.9968 1.0000 0.0 6ala:A, 6ala:C, 6alv:A, 6amp:A, 6an3:A, 6ao6:A, 6ay0:A, 8dsj:A, 8dsj:K, 8dsl:A, 8dsl:B, 8dsn:A, 8dsn:K, 3mib:A, 3mic:A, 3mid:A, 3mie:A, 3mif:A, 3mig:A, 3mih:A, 3mlj:A, 3mlk:A, 3mll:A, 6nck:A, 1opm:A, 1phm:A, 3phm:A, 1sdw:A, 5wja:A, 5wja:D, 1yi9:A, 1yip:A, 1yjk:A
2 4zel:A 550 304 0.2830 0.1600 0.2895 1.66e-23
3 6cw3:E 120 56 0.0579 0.1500 0.3214 0.58 6cw2:C
4 6u3t:B 253 30 0.0386 0.0474 0.4000 1.9 6u3t:A
5 3m4e:C 293 38 0.0450 0.0478 0.3684 2.4 3m4e:B, 3m4e:G, 3m4e:F, 3m4e:E, 6u49:A, 6u49:C, 6u49:B, 6u49:G, 6u49:D, 6u49:E, 6u49:F, 6u4p:A, 6u4p:B, 6u4p:C, 6u4p:D, 6u4p:E, 6u4p:F, 6u4p:G
6 6lyc:A 110 26 0.0289 0.0818 0.3462 6.1
7 1h6f:B 186 42 0.0354 0.0591 0.2619 9.8 1h6f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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