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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG
NEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM
MKKEFYFVRTKVDSDITNEADKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFM
VSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQ
VEAMIKSPAVFKPTDEETIQERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLKLGR

The query sequence (length=395) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1tq6:A 402 399 0.9873 0.9701 0.9774 0.0 5fph:A, 5fph:B, 5fph:C, 5fph:D, 5fph:E, 5fph:F, 5fph:G, 4lv5:B, 4lv8:B, 1tpz:A, 1tpz:B, 1tq2:A, 1tq2:B, 1tq4:A
2 7c3k:B 389 392 0.4405 0.4473 0.4439 4.12e-119 7c3k:A, 8jqz:A, 8jqz:B
3 7vex:A 412 394 0.4481 0.4296 0.4492 2.85e-116 8h4m:A
4 5oxf:B 591 109 0.0759 0.0508 0.2752 0.12
5 5l22:B 540 54 0.0506 0.0370 0.3704 0.14 5l22:A
6 5oxf:A 703 109 0.0759 0.0427 0.2752 0.20
7 7u0u:A 195 88 0.0608 0.1231 0.2727 0.20 6tz7:B
8 8pfh:C 289 71 0.0582 0.0796 0.3239 0.29
9 6jeo:bF 141 79 0.0582 0.1631 0.2911 0.35 6jeo:aF, 6jeo:cF, 6jeo:dF, 6k61:F, 6k61:f, 6tcl:F1, 6tcl:F2, 6tcl:F, 6tcl:FF, 7y3f:F
10 3hjn:A 189 79 0.0658 0.1376 0.3291 0.36 3hjn:B
11 8sgd:A 291 70 0.0506 0.0687 0.2857 1.0 8fwp:A, 8pfh:A, 8sgd:C
12 5cyp:D 227 78 0.0608 0.1057 0.3077 1.1
13 7m6j:E 296 51 0.0456 0.0608 0.3529 1.8 7m6j:B, 6upa:B
14 5oxf:C 601 38 0.0380 0.0250 0.3947 1.9 5oxf:D
15 3iev:A 302 66 0.0557 0.0728 0.3333 2.0 7c1o:A, 3r9w:A, 3r9x:A
16 5fhd:B 400 108 0.0835 0.0825 0.3056 2.0
17 4b2g:B 572 98 0.0658 0.0455 0.2653 2.1 4b2g:A
18 8jwf:A 1204 17 0.0304 0.0100 0.7059 2.1 8jwg:A, 8jwi:A
19 7e5a:B 471 86 0.0658 0.0552 0.3023 2.5 7e5a:A
20 7niw:A 1140 84 0.0582 0.0202 0.2738 2.6 7niu:A, 7niv:A, 6s7p:A
21 8kab:h 430 27 0.0329 0.0302 0.4815 2.7
22 5ftc:A 431 106 0.0835 0.0766 0.3113 2.9 5fhd:A, 5fhe:A, 5fhf:A, 5ftb:A, 5fte:A, 5ftf:A, 6l3g:A, 6l3g:B
23 4q4a:A 572 27 0.0354 0.0245 0.5185 3.0 3qf4:A, 6quz:A, 6quz:C, 6qv0:A, 6qv0:C, 6qv1:A, 6qv1:C, 6qv2:A, 6qv2:C
24 6c3p:E 1359 47 0.0405 0.0118 0.3404 3.6 6c3p:H, 6c3p:G, 6c3p:F, 5ywb:B, 5ywb:D, 5ywb:F, 5ywb:H, 5ywc:B, 5ywc:D, 5ywc:F, 5ywc:H
25 5ucv:A 187 30 0.0329 0.0695 0.4333 3.7
26 7ckf:A 256 86 0.0658 0.1016 0.3023 3.7 7ckf:B
27 7s5x:E 1412 47 0.0405 0.0113 0.3404 3.9 6pz9:C, 7s5v:E, 7s5y:E, 7s5z:E, 7s60:E, 7s61:E, 8ti1:E, 8ti1:H, 8ti1:G, 8ti1:F, 8ti2:E, 8ti2:H, 8ti2:G, 8ti2:F, 7w4o:B, 7w4o:D, 7w4o:F, 7w4o:H, 7w4p:B, 7w4p:D, 7w4p:F, 7w4p:H
28 7am2:BU 463 145 0.0861 0.0734 0.2345 3.9
29 6c3o:E 1290 47 0.0405 0.0124 0.3404 4.1 6c3o:H, 6c3o:G, 6c3o:F
30 6upr:B 270 64 0.0481 0.0704 0.2969 4.4
31 8dkt:B 262 47 0.0430 0.0649 0.3617 4.4
32 5cyp:A 248 20 0.0278 0.0444 0.5500 5.0 5cyp:B, 5cyp:C
33 5ykf:B 1309 47 0.0405 0.0122 0.3404 5.2 5ykf:D, 5ykf:F, 5ykf:H, 5ykg:B, 5ykg:D, 5ykg:F, 5ykg:H, 5yw8:B, 5yw8:D, 5yw8:F, 5yw8:H, 5yw9:B, 5yw9:D, 5yw9:F, 5yw9:H, 5ywa:B, 5ywa:D, 5ywa:F, 5ywa:H
34 6clv:C 257 147 0.0886 0.1362 0.2381 5.2 1ad4:A, 6clv:A, 6clv:B
35 5olc:C 351 69 0.0557 0.0627 0.3188 5.3 5olc:D, 5olc:F, 5olc:G, 5olc:H
36 6jbj:A 565 31 0.0253 0.0177 0.3226 5.5 6jbj:B
37 6jb1:B 1366 47 0.0405 0.0117 0.3404 5.5 6jb1:D, 6jb1:F, 6jb1:H, 7wit:A, 5yw7:B, 5ywd:B
38 9bht:E 288 38 0.0380 0.0521 0.3947 5.5 9bht:B
39 7u1s:E 1439 47 0.0405 0.0111 0.3404 5.9 6pza:C, 6pzi:G, 7tys:E, 7tyt:E, 7u1e:E, 7u1q:E, 7u24:E, 7u2x:E, 7u6y:E, 7u7m:E, 7uaa:E
40 6quz:D 574 56 0.0506 0.0348 0.3571 6.0 6quz:B, 6qv0:B, 6qv0:D, 6qv1:B, 6qv1:D, 6qv2:B, 6qv2:D
41 5cyo:A 272 20 0.0278 0.0404 0.5500 6.5 5cyo:B, 4yqf:B, 4yqf:A
42 8cnt:A 620 40 0.0405 0.0258 0.4000 6.5
43 2j3e:A 249 30 0.0354 0.0562 0.4667 7.1 3bb3:A, 3bb4:A, 3def:A
44 5k5w:B 226 34 0.0354 0.0619 0.4118 7.1
45 6hqv:A 1555 52 0.0354 0.0090 0.2692 7.6 6hqv:B
46 6mq9:B 267 19 0.0253 0.0375 0.5263 8.0 6mq9:A, 6mq9:D, 6mq9:C, 6mqb:A, 6mqk:A, 6mqk:D, 6mqk:B, 6mqk:C, 6mql:A
47 8rjf:A 424 28 0.0278 0.0259 0.3929 8.0 8rjf:B, 8rjf:C, 8rjf:D, 8rjf:E, 8rjf:F, 8rkd:F, 8rkd:A, 8rkd:C, 8rkd:D
48 3zjc:E 286 76 0.0532 0.0734 0.2763 8.0 3zjc:A, 3zjc:B, 3zjc:C, 3zjc:D
49 6yxx:EA 532 22 0.0278 0.0207 0.5000 8.4 7aoi:XL, 6yxy:EA
50 6d3r:A 1127 58 0.0481 0.0169 0.3276 8.7 6d3s:A
51 8v7z:A 1104 118 0.0759 0.0272 0.2542 8.9
52 8fpf:D 666 18 0.0304 0.0180 0.6667 8.9 8fhk:D, 8fmv:D, 7m33:D, 8szc:D, 8t1p:D, 8t3k:D
53 6baa:E 1317 46 0.0405 0.0121 0.3478 8.9 6baa:F, 6baa:G, 6baa:H
54 3l2j:A 484 69 0.0506 0.0413 0.2899 9.6 3c4m:A, 3c4m:B, 3h3g:A, 3l2j:B
55 5w81:A 1173 20 0.0304 0.0102 0.6000 9.7
56 3zjc:F 252 22 0.0278 0.0437 0.5000 9.8
57 8g4c:B 248 69 0.0456 0.0726 0.2609 9.9 8g4c:C, 8g4d:B, 8g4d:C, 7tch:B, 7tch:C
58 2qag:B 246 27 0.0278 0.0447 0.4074 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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