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BioLiP
>protein
NDKEYDKHKRNQQARAFYHSREWERTRLAVLAKDNYLCQHCLKEKKITRAVIVDHITPLLVDWSKRLDMDNLQSLCQACH
NRKTAEDKRRYG

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5h0m:A 92 92 1.0000 1.0000 1.0000 2.08e-65 5h0o:A
2 5mkw:A 119 33 0.1630 0.1261 0.4545 0.002 5mkw:B
3 8jal:B 573 40 0.1739 0.0279 0.4000 1.1 8jal:A, 8jaq:A, 8jaq:B, 8jaq:J, 8jaq:K, 8jar:A, 8jar:B, 8jas:A, 8jas:B, 8jas:K, 8jas:J, 8jau:A, 8jau:B, 8jav:A, 8jav:B, 8jav:J, 8jav:K
4 3oa8:B 180 37 0.1304 0.0667 0.3243 2.2 3oa8:D, 3oa8:F, 3ocd:B, 3ocd:D
5 8yb6:A 350 75 0.2283 0.0600 0.2800 3.4 8yha:A
6 7r2g:B 351 54 0.1630 0.0427 0.2778 4.2 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
7 8cli:B 689 57 0.2065 0.0276 0.3333 5.2 8clj:B, 8clj:G, 8cll:B, 8cll:G
8 7vws:B 328 46 0.1739 0.0488 0.3478 7.2 7vws:A
9 6cxt:B 372 99 0.2500 0.0618 0.2323 9.9 6cy8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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