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BioLiP
>protein
NDHLNTNPKTNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIDENPAPAPNITG

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vb9:c 68 62 0.9677 0.8824 0.9677 3.19e-39 7f0l:X, 7pil:X, 7pqd:X, 7pqd:x, 7va9:C, 7va9:c, 7vb9:C, 7vnm:X, 7vny:X, 7vor:X, 7vor:x, 7vot:X, 7vot:x, 7vy2:X, 7vy2:x, 7vy3:X
2 5eiy:B 658 32 0.2419 0.0228 0.4688 0.063 5ej1:B, 5ejz:B, 4hg6:B, 4p00:B, 4p02:B
3 7r81:U1 173 17 0.1452 0.0520 0.5294 0.66
4 6p5i:AS 176 16 0.1452 0.0511 0.5625 1.4 6p5j:AS, 6p5k:AS, 6p5n:AS, 7zjw:LV, 7zjx:LV
5 1ylh:A 524 50 0.2419 0.0286 0.3000 2.0
6 8i9p:LS 174 17 0.1452 0.0517 0.5294 2.1 8i9r:LS, 8i9t:LS, 8i9v:LS, 8i9w:LS, 8i9x:LS, 8i9y:LS, 8i9z:LS, 8ia0:LS, 7olc:LS, 7old:LS, 8oo0:LS, 8pv1:LS, 8pv2:LS, 8pv3:LS, 8pv4:LS, 8pv5:LS, 8pv6:LS, 8pv7:LS, 8pv8:LS, 8pvk:LS, 8pvl:LS, 7z3n:LS, 7z3o:LS
7 3nj3:A 327 20 0.1613 0.0306 0.5000 3.1 3nj3:B, 1vbr:A, 1vbr:B
8 8yfq:R 746 18 0.1129 0.0094 0.3889 3.5
9 5nbp:A 237 14 0.1613 0.0422 0.7143 8.5 7kr6:AAA, 7kr6:BBB, 5nbp:B, 6vho:AAA
10 8a3w:R 178 19 0.1290 0.0449 0.4211 10.0 8a98:R, 6az3:R, 3jcs:R, 8ovj:R, 8rxh:LR, 8rxx:LR, 5t2a:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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