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BioLiP
>protein
NDEEEYEAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMD
EDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTH

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qo9:K 212 123 1.0000 0.5802 1.0000 9.64e-88 7aav:K, 7abf:K, 7abg:K, 7abi:K, 8h6k:4K, 8q7n:K
2 8swq:B 278 23 0.0894 0.0396 0.4783 0.86 8swp:B, 8swq:E, 8swr:B, 8sws:B
3 8swq:A 302 23 0.0894 0.0364 0.4783 0.93 5ifk:A, 5ifk:B, 5ifk:C, 8swp:A, 8swp:D, 8swp:E, 8swq:D, 8swr:A, 8swr:D, 8sws:A, 8sws:D, 8sws:E
4 4pfd:B 410 45 0.1138 0.0341 0.3111 1.7 4p8m:B
5 5u8t:2 583 52 0.1220 0.0257 0.2885 2.7
6 2n8a:A 214 70 0.1220 0.0701 0.2143 6.1 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
7 2cs2:A 134 70 0.1220 0.1119 0.2143 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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