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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVN
ALAQLMTWKTAVAKIPYGGAKGGIGCDPSKLSISELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFH
GYSPAVVTGKPIDLGGSLGRDAATGRGVMFGTEALLNEHGKTISGQRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITGA
IKNKDGIDIPALLKHTKEHRGVKGFDGADPIDPNSILVEDCDILVPAALGGVINRENANEIKAKFIIEAANHPTDPDADE
ILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNDELKTYMTRSFKDLKEMCKTHSCDLRMGAFTLGVNRVA
QATILRGWG

The query sequence (length=409) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yeh:A 410 409 1.0000 0.9976 1.0000 0.0 6yeh:B, 6yeh:C, 6yeh:D, 6yeh:E, 6yeh:F, 6yei:A, 6yei:B, 6yei:C, 6yei:D, 6yei:E, 6yei:F
2 8owm:C 413 408 0.8044 0.7966 0.8064 0.0 8owm:A, 8owm:B, 8owm:D, 8owm:E, 8owm:F, 8own:A, 8own:B, 8own:C, 8own:D, 8own:E, 8own:F
3 8s38:B 414 408 0.8020 0.7923 0.8039 0.0 8s38:A, 8s38:C, 8s39:A, 8s39:B, 8s39:C, 8s3a:A, 8s3a:B, 8s3a:C, 8s3a:D, 8s3a:E, 8s3a:F, 8s3b:A, 8s3b:B, 8s3b:C, 8s3b:D, 8s3b:E, 8s3b:F, 8s3b:G, 8s3b:H, 8s3b:I, 8s3b:J, 8s3b:K, 8s3b:L, 8s3c:B, 8s3d:A, 8s3d:B, 8s3d:C, 8s3d:D, 8s3d:E, 8s3d:F
4 8xd5:A 419 405 0.4425 0.4320 0.4469 3.20e-120 8hho:A, 8hiq:A, 8hiz:A, 8hj9:A, 8xco:A, 8xcp:A, 8xcq:A, 8xcr:A, 8xcs:A, 8xct:A, 8xcu:A, 8xcv:A, 8xcw:A, 8xcx:A, 8xcy:A, 8xcz:A, 8xd0:A, 8xd1:A, 8xd2:A, 8xd3:A, 8xd4:A, 8xd6:A, 8znb:A, 8znc:A, 8znd:A, 8zne:A, 8zng:A
5 4xgi:A 416 396 0.4597 0.4519 0.4747 1.52e-117 4xgi:B, 4xgi:C, 4xgi:D, 4xgi:E, 4xgi:F
6 3aoe:B 424 392 0.4572 0.4410 0.4770 1.11e-116 3aoe:A, 3aog:A, 3aog:E, 3aog:B, 3aog:D, 3aog:C, 3aog:F, 3aog:G, 3aog:I, 3aog:H, 3aog:J, 3aog:L, 3aog:K
7 8kar:A 414 410 0.4425 0.4372 0.4415 1.22e-111 8kao:C, 8kar:B, 8kar:C
8 1v9l:A 418 407 0.4156 0.4067 0.4177 3.02e-100 1v9l:B, 1v9l:C, 1v9l:D, 1v9l:E, 1v9l:F
9 6dhd:A 501 327 0.3667 0.2994 0.4587 1.05e-85 8ar7:A, 8ar7:B, 8ar7:C, 8ar7:E, 8ar7:D, 8ar7:F, 8ar8:A, 8ar8:B, 8ar8:C, 8ar8:D, 8ar8:E, 8ar8:F, 6dhd:B, 6dhd:C, 6dhd:D, 6dhd:F, 6dhd:E, 6dhk:A, 6dhk:B, 6dhk:F, 6dhk:C, 6dhk:D, 6dhk:E, 6dhk:G, 6dhk:H, 6dhk:L, 6dhk:I, 6dhk:J, 6dhk:K, 6dhl:A, 6dhl:F, 6dhl:B, 6dhl:C, 6dhl:D, 6dhl:E, 6dhl:G, 6dhl:L, 6dhl:H, 6dhl:I, 6dhl:J, 6dhl:K, 6dhm:A, 6dhm:B, 6dhm:C, 6dhm:D, 6dhm:E, 6dhm:F, 6dhn:A, 6dhn:B, 6dhn:C, 6dhn:D, 6dhn:E, 6dhn:F, 6dhq:A, 6dhq:B, 6dhq:C, 6dhq:D, 6dhq:E, 6dhq:F, 3etd:A, 3etd:E, 3etd:B, 3etd:C, 3etd:D, 3etd:F, 3ete:A, 3ete:E, 3ete:B, 3ete:C, 3ete:F, 3ete:D, 3etg:A, 3etg:B, 3etg:C, 3etg:D, 3etg:E, 3etg:F, 1hwy:A, 1hwy:B, 1hwy:F, 1hwy:C, 1hwy:E, 1hwy:D, 3jd0:A, 3jd0:B, 3jd0:C, 3jd0:D, 3jd0:E, 3jd0:F, 3jd1:A, 3jd1:C, 3jd1:B, 3jd1:D, 3jd1:F, 3jd1:E, 3jd2:A, 3jd2:B, 3jd2:C, 3jd2:D, 3jd2:E, 3jd2:F, 3jd3:A, 3jd3:B, 3jd3:C, 3jd3:D, 3jd3:E, 3jd3:F, 3jd4:A, 3jd4:C, 3jd4:B, 3jd4:D, 3jd4:F, 3jd4:E, 1nqt:A, 1nqt:B, 1nqt:F, 1nqt:C, 1nqt:D, 1nqt:E, 1nqt:G, 1nqt:H, 1nqt:L, 1nqt:I, 1nqt:J, 1nqt:K
10 3aoe:F 417 399 0.3643 0.3573 0.3734 6.89e-84 3aoe:E, 3aoe:C, 3aoe:D
11 5gud:E 460 400 0.3203 0.2848 0.3275 1.01e-56 5gud:A, 5gud:B, 5gud:C, 5gud:D, 5gud:F, 5ijz:A, 5ijz:B, 5ijz:C, 5ijz:D, 5ijz:E, 5ijz:F, 5ijz:G, 5ijz:H, 5ijz:J
12 1bgv:A 449 406 0.3178 0.2895 0.3202 1.96e-54
13 7f79:C 458 413 0.3227 0.2882 0.3196 3.92e-45 7f79:A, 7f79:B, 7f79:D, 7f79:E, 7f79:F
14 5xvv:B 459 411 0.3130 0.2789 0.3114 4.76e-39 5xvv:A, 5xvv:C, 5xvx:A, 5xw0:A, 5xwc:A
15 7ecr:A 460 411 0.3105 0.2761 0.3090 4.93e-39 7ecr:B, 7ecr:C, 7ecs:A, 7ecs:B, 7ecs:C, 7ect:A, 7ect:B, 7ect:C
16 6ach:A 364 360 0.2641 0.2967 0.3000 7.00e-27 6ach:B, 6ach:C, 6ach:D, 6ach:E, 6ach:F, 6ach:G, 6ach:H
17 8hr6:A 359 291 0.2249 0.2563 0.3162 7.70e-24 8hr6:B
18 8gxd:A 366 291 0.2225 0.2486 0.3127 2.85e-21
19 1bw9:A 350 296 0.2054 0.2400 0.2838 1.09e-18 1bw9:B, 1bxg:A, 1bxg:B, 1c1d:A, 1c1d:B, 1c1x:A, 1c1x:B
20 6itd:A 328 44 0.0489 0.0610 0.4545 0.049 6k36:A, 6k37:A, 6k38:A
21 4n20:A 639 70 0.0489 0.0313 0.2857 0.35 4n25:A, 4n2d:A, 4n2f:A, 4n2h:A, 4n2k:A
22 4n2i:A 662 70 0.0489 0.0302 0.2857 0.40 4n22:A, 4n24:A, 4n26:A, 4n28:A, 4n2a:A, 4n2b:A, 4n2c:A, 4n2e:A, 4n2g:A, 4n2l:A, 4n2m:A, 4n2n:A
23 5x51:M 1386 98 0.0685 0.0202 0.2857 0.53 5x4z:A, 5x51:A, 8yfr:A
24 4ljb:C 223 96 0.0660 0.1211 0.2812 0.78 4ljb:A, 4ljc:C, 4ljd:A, 4ljd:B, 4ljd:C, 4ljd:D, 3p8u:A, 3p8u:B, 3p8u:D, 3tmr:A, 3tmr:B, 3tmr:C, 3tmr:D, 2vvh:A, 2vvh:B, 2vvh:C, 2vvh:D, 2vvi:A, 2vvi:B, 2vvi:C, 2vvi:D, 2vvj:A, 2vvj:B, 2vvj:C, 2vvj:D
25 3hja:A 334 75 0.0562 0.0689 0.3067 2.0 3hja:B, 3hja:C, 3hja:D
26 1lss:A 132 46 0.0489 0.1515 0.4348 2.2 1lss:B, 1lss:C, 1lss:D
27 4k28:A 266 74 0.0538 0.0827 0.2973 3.4 4k28:B
28 2vyn:D 334 27 0.0293 0.0359 0.4444 5.1 2vyv:D
29 1wg8:A 281 61 0.0391 0.0569 0.2623 5.4 1wg8:B
30 3h9e:P 337 27 0.0318 0.0386 0.4815 5.4 5c7o:O, 5c7o:P, 3h9e:O, 3pfw:O, 3pfw:P
31 1t71:A 281 43 0.0318 0.0463 0.3023 6.0
32 7aqc:D 207 36 0.0367 0.0725 0.4167 6.6 7aqd:D, 7as8:F, 7as9:F, 8buu:D, 6ha1:D, 6ha8:D, 6htq:D, 3j3v:D, 3j3w:D, 3j9w:BE, 5njt:X, 7o5b:a, 7ope:F, 6ppk:D, 8qcq:D, 7qgu:D, 7qh4:D, 8qpp:a, 7qv1:D, 7qv2:D, 7qv3:D, 8r55:a, 8s1p:D, 8s1u:D, 6tnn:X, 6tpq:X
33 2eqd:A 510 86 0.0465 0.0373 0.2209 7.3 2e0p:A, 2e4t:A, 2eex:A, 2ej1:A, 2eo7:A
34 5cxx:B 274 74 0.0513 0.0766 0.2838 7.5 5cxx:A, 5cxx:C
35 4xym:B 229 51 0.0416 0.0742 0.3333 9.9 4xym:D, 4xz3:B, 4xz3:D, 4y8v:B, 4y8v:D, 4yb8:B, 4yb8:D, 4ybz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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