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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVTTFSWDYLISPDENLMLCLYDKVTRTKARWK
CSLKDGVVTINRNDYTFQKAQVEAEWV

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fmf:M 116 115 1.0000 0.9224 0.9304 6.14e-71 8cen:U, 8ceo:U, 7ml1:U, 7ml4:U, 1nh2:C, 7o4i:U, 7o4j:U, 7o72:U, 7o73:U, 7o75:U, 7oha:L, 5sva:d, 1ytf:C, 7zs9:U, 7zsa:U, 7zsb:U
2 7oh9:L 96 107 0.8972 1.0000 0.8972 2.13e-61 5fz5:U, 6gyl:U, 6gym:U
3 7egd:Q 101 103 0.3738 0.3960 0.3883 1.03e-24 7egj:Q
4 6mzm:W 90 103 0.3832 0.4556 0.3981 2.99e-24 7zwc:U, 7zwd:U, 7zxe:U
5 7edx:Q 122 121 0.4019 0.3525 0.3554 9.86e-23 8bvw:U, 7eg7:Q, 7eg9:Q, 7ega:Q, 7ena:DQ, 5fur:C, 8gxq:DQ, 8gxs:DQ, 5iy6:N, 5iy7:N, 5iy8:N, 5iy9:N, 5iya:N, 5iyb:N, 5iyc:N, 5iyd:N, 7lbm:M, 1nvp:C, 7nvr:U, 7nvs:U, 7nvt:U, 7nvu:U, 7nvy:U, 7nvz:U, 7nw0:U, 6o9l:N, 8s51:U, 8s5n:U, 8wak:Q, 8wal:Q, 8wan:Q, 8wao:Q, 8wap:Q, 8waq:Q, 8war:Q, 8was:Q
6 6iql:A 341 42 0.1495 0.0469 0.3810 0.85 6iql:B
7 6czy:A 362 40 0.0841 0.0249 0.2250 2.0 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
8 1k4w:A 244 25 0.1121 0.0492 0.4800 2.4 1n4h:A, 1nq7:A
9 6ny6:Y 84 41 0.1121 0.1429 0.2927 2.4 6otr:QY, 6otr:QZ, 6otr:XY, 6oxa:QY, 6oxa:QZ, 6oxa:XY, 6oxi:QY, 6oxi:QZ, 6oxi:XY, 4v8x:AY, 4v8x:AZ, 4v8x:CY, 4v8x:CZ
10 5ve9:C 74 32 0.1215 0.1757 0.4062 5.7
11 1jju:A 489 30 0.0935 0.0204 0.3333 6.2 1pby:A
12 5c79:A 104 44 0.1121 0.1154 0.2727 6.4 5c79:B
13 7pug:A 829 67 0.1495 0.0193 0.2388 8.6 7pxq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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