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BioLiP
>protein
MYVCLCQGVTDNQIRDAIYEGCCSYREVREATGVGTQCGKCASLAKQVVRETLNDLQ

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4e6k:G 57 57 1.0000 1.0000 1.0000 8.84e-37 4e6k:I, 6e6q:A, 6e6q:B, 6e6r:A, 6e6s:A, 6e6s:B
2 4e6k:H 33 51 0.5789 1.0000 0.6471 1.63e-13
3 8rbq:C 477 18 0.1579 0.0189 0.5000 3.5 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
4 8e1u:A 1126 56 0.2807 0.0142 0.2857 3.6 8e1u:B, 8e1u:C, 8e1u:D, 8e1u:E, 8e1u:F, 8e1u:G, 8e1u:H
5 1on3:E 520 31 0.2456 0.0269 0.4516 3.7 1on3:A, 1on3:D, 1on3:B, 1on3:C, 1on3:F, 1on9:A, 1on9:B, 1on9:C, 1on9:D, 1on9:E, 1on9:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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