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BioLiP
>protein
MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT
TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG
AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDW
LVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d1u:A 318 317 1.0000 0.9969 1.0000 0.0 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
2 4nhd:D 318 317 0.7256 0.7233 0.7256 6.96e-173 4nhd:A, 4nhd:B, 4nhd:C
3 6kvs:A 313 318 0.4038 0.4089 0.4025 1.95e-83 6kvs:B
4 8vda:A 311 314 0.4385 0.4469 0.4427 2.10e-81
5 5bqs:A 323 323 0.3975 0.3901 0.3901 1.87e-77 5bqs:B
6 3il5:A 320 327 0.4101 0.4062 0.3976 6.03e-75 3il4:A, 3il4:B, 3il4:C, 3il4:D, 3il5:B, 3il5:C, 3il5:D, 3il6:A
7 4x0o:E 360 322 0.4006 0.3528 0.3944 1.15e-72 5kp2:B, 5v0p:A, 5v0p:B, 4x0o:A, 4x0o:B, 4x0o:D, 4x0o:F, 4x0o:G, 4x0o:H
8 3h77:B 338 325 0.4038 0.3787 0.3938 3.45e-67 3h77:A, 3h78:A, 3h78:B
9 1mzj:A 334 321 0.4006 0.3802 0.3956 6.65e-64 1mzj:B
10 2qnx:A 334 319 0.3691 0.3503 0.3668 8.56e-59 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B
11 5yo9:B 366 373 0.2934 0.2541 0.2493 1.64e-19 5yoa:B
12 3s20:A 344 301 0.2555 0.2355 0.2691 8.64e-16 6b2u:A, 4ku2:B, 4ku3:B, 4ku5:B, 3s20:B, 3s21:A, 3s23:A, 5vxe:A, 5vxg:A, 5vxi:A
13 6esq:I 347 310 0.2366 0.2161 0.2419 4.14e-14
14 6et3:A 309 324 0.2050 0.2104 0.2006 6.48e-10
15 5gk1:A 379 333 0.2366 0.1979 0.2252 1.21e-07 5gk1:C
16 3awj:A 380 344 0.2650 0.2211 0.2442 1.36e-07
17 6gw3:A 383 289 0.2208 0.1828 0.2422 5.01e-07 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
18 4b0n:A 379 258 0.2114 0.1768 0.2597 2.28e-06 4b0n:B
19 6op5:A 383 282 0.2271 0.1880 0.2553 2.68e-06 6op5:B
20 5hwo:A 418 153 0.1388 0.1053 0.2876 3.81e-06 5hwp:A, 5hwq:A, 5hwr:A
21 1xpl:A 389 171 0.1483 0.1208 0.2749 4.51e-06 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
22 7yj6:A 390 264 0.2177 0.1769 0.2614 5.03e-06 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
23 7f08:J 379 285 0.2240 0.1873 0.2491 5.30e-06 7f08:B, 7f08:D, 7f08:L
24 5wgc:B 343 336 0.2461 0.2274 0.2321 7.10e-06 5wgc:A, 4xs9:A, 4xs9:B
25 7d41:A 367 290 0.2366 0.2044 0.2586 7.22e-06 7d41:B
26 3v4x:A 387 181 0.1514 0.1240 0.2652 7.49e-06 3v4x:B, 3v4x:C, 3v4x:D, 1ysl:B
27 1chw:A 389 281 0.2240 0.1825 0.2527 3.11e-05 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
28 7bur:B 389 295 0.2334 0.1902 0.2508 3.85e-05 7bur:A, 8jrd:A, 8jrd:B
29 2d3m:A 405 299 0.2492 0.1951 0.2642 4.20e-05 2d3m:B, 2d52:A, 2d52:B
30 1ee0:A 376 353 0.2397 0.2021 0.2153 5.89e-05 1ee0:B
31 3wd7:A 401 286 0.2177 0.1721 0.2413 6.07e-05 7cct:A, 6l7j:A, 3wd7:B
32 5kp7:A 410 174 0.1262 0.0976 0.2299 2.31e-04 5kp8:A
33 3sqz:A 388 111 0.0915 0.0747 0.2613 2.93e-04
34 5w8q:A 379 284 0.2177 0.1821 0.2430 0.001 5w8q:B, 5wc4:A, 5wc4:B
35 6j1m:A 381 350 0.2650 0.2205 0.2400 0.003 6j1m:B, 6j1n:A, 6j1n:B
36 7vf0:B 396 134 0.1199 0.0960 0.2836 0.007 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
37 8v8m:A 389 226 0.1767 0.1440 0.2478 0.018 8v8m:C
38 1xes:A 387 301 0.2208 0.1809 0.2326 0.055 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
39 5wx6:B 376 291 0.1956 0.1649 0.2131 0.074 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
40 1z1f:A 388 344 0.2461 0.2010 0.2267 0.098
41 3t6s:B 342 265 0.1924 0.1784 0.2302 0.11
42 4n4j:A 497 144 0.1230 0.0785 0.2708 0.14 4n4k:A, 4n4l:A, 4n4m:A, 4rwm:A
43 6hsj:B 390 123 0.1009 0.0821 0.2602 0.15 6hsp:B
44 2f9a:A 404 279 0.1956 0.1535 0.2222 0.54
45 7cqt:A 450 136 0.1136 0.0800 0.2647 0.75 7cqt:B, 7cqt:C, 2fa0:A, 2fa3:A
46 5wx3:C 353 285 0.1956 0.1756 0.2175 0.79
47 3km5:A 179 43 0.0410 0.0726 0.3023 4.2 3km5:B
48 5x7o:A 1247 43 0.0536 0.0136 0.3953 4.3 5x7o:B, 5x7p:B, 5x7p:A, 5x7q:A, 5x7q:B, 5x7r:A, 5x7r:B, 5x7s:A, 5x7s:B
49 5kzk:A 262 87 0.0883 0.1069 0.3218 6.5 5kzk:B, 5l0z:A, 5l0z:B
50 4v3p:SA 260 59 0.0473 0.0577 0.2542 9.7 8auv:Z, 8b2l:Z1, 8ip8:za, 8ip9:za, 8ipa:za, 8ipb:za, 8jiw:BA, 7qix:E, 7qiz:u, 8r6f:k, 4v7e:BA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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