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BioLiP
>protein
MYKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEDQISKGFILTCVA
YPTSDCVIQTHQEEALY

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ab5:A 97 97 1.0000 1.0000 1.0000 1.28e-67 3ab5:B, 3wcq:A
2 7y5e:NN 99 96 0.7629 0.7475 0.7708 6.49e-53 7y5e:N2, 7y7a:N7, 7y7a:No
3 7s3d:X 97 96 0.7320 0.7320 0.7396 2.43e-52 7s3d:W, 7s3d:x
4 1rfk:B 97 95 0.7216 0.7216 0.7368 5.03e-51 3p63:A, 3p63:B, 1rfk:A
5 3b2g:A 98 96 0.7113 0.7041 0.7188 1.87e-50 3b2g:B
6 4fxc:A 98 96 0.7113 0.7041 0.7188 3.99e-50
7 1czp:A 98 96 0.7113 0.7041 0.7188 2.19e-48 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
8 6khi:1 98 96 0.7010 0.6939 0.7083 3.76e-45 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
9 5auk:A 96 96 0.6701 0.6771 0.6771 1.72e-44 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
10 7akt:A 107 96 0.6804 0.6168 0.6875 2.37e-44 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
11 6xtf:D 96 99 0.6598 0.6667 0.6465 7.00e-43 6xtf:C
12 6iri:A 107 96 0.5876 0.5327 0.5938 1.48e-42
13 3av8:A 97 97 0.7113 0.7113 0.7113 3.20e-42 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
14 4zho:A 97 95 0.6289 0.6289 0.6421 9.49e-42 4zho:B
15 1awd:A 94 96 0.6701 0.6915 0.6771 1.41e-41
16 1a70:A 97 95 0.5979 0.5979 0.6105 3.90e-39
17 6yac:N 97 95 0.6392 0.6392 0.6526 4.21e-39 6yez:N
18 1gaq:B 98 95 0.6289 0.6224 0.6421 6.16e-39 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
19 5h57:A 97 97 0.6289 0.6289 0.6289 4.35e-38 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
20 1pfd:A 96 95 0.5670 0.5729 0.5789 4.36e-38
21 4itk:A 104 96 0.6082 0.5673 0.6146 3.93e-37
22 1iue:A 98 81 0.5361 0.5306 0.6420 2.19e-36 1iue:B
23 4zhp:A 98 95 0.5773 0.5714 0.5895 4.42e-36
24 6vjv:A 96 95 0.5464 0.5521 0.5579 2.68e-33 6vjv:B
25 1frr:A 95 84 0.5155 0.5263 0.5952 5.98e-33 1frr:B
26 8jc1:A 267 83 0.5464 0.1985 0.6386 9.29e-32 8jc1:B, 8jc1:C, 8jc1:D
27 1frd:A 98 95 0.5464 0.5408 0.5579 3.10e-30
28 1wri:A 93 95 0.4948 0.5161 0.5053 3.53e-27
29 4n58:A 266 80 0.4742 0.1729 0.5750 2.03e-25 4n58:B, 4n59:A, 4n59:B
30 1e0z:A 128 73 0.3299 0.2500 0.4384 1.28e-15 1e10:A
31 1doi:A 128 66 0.3093 0.2344 0.4545 5.60e-15
32 1krh:A 337 84 0.2577 0.0742 0.2976 4.19e-08 1krh:B
33 5ogx:A 333 76 0.2371 0.0691 0.3026 1.58e-07
34 1jq4:A 98 82 0.2577 0.2551 0.3049 9.53e-07
35 7c3b:B 306 84 0.2371 0.0752 0.2738 4.20e-06
36 7c3b:C 334 84 0.2371 0.0689 0.2738 4.66e-06 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
37 3zyy:X 628 66 0.1959 0.0303 0.2879 6.31e-06 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
38 6kbh:A 765 71 0.1856 0.0235 0.2535 3.36e-05
39 2pia:A 321 69 0.1856 0.0561 0.2609 4.95e-05
40 7ylr:A 326 58 0.1649 0.0491 0.2759 2.10e-04
41 4wqm:A 326 67 0.2165 0.0644 0.3134 3.56e-04
42 6laa:A 753 76 0.1753 0.0226 0.2237 0.002 6gii:A, 6ldl:A
43 6icm:D 87 56 0.1649 0.1839 0.2857 0.004
44 5frt:E 105 53 0.1856 0.1714 0.3396 0.008 5ffi:E
45 5frt:A 119 53 0.1856 0.1513 0.3396 0.011 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
46 7q5y:A 626 41 0.1649 0.0256 0.3902 0.018 7q5y:G, 7q5y:M, 7q5y:S
47 7awt:G 907 93 0.2371 0.0254 0.2473 0.20 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
48 1i7h:A 109 55 0.1649 0.1468 0.2909 0.34 1i7h:B, 1i7h:C
49 5uj5:A 132 25 0.1340 0.0985 0.5200 1.5
50 8oh5:C 1172 55 0.1856 0.0154 0.3273 1.8 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
51 2wlb:A 103 40 0.1546 0.1456 0.3750 1.9 2wlb:B
52 2y5c:A 107 29 0.1546 0.1402 0.5172 3.5 2y5c:B
53 3kl9:A 340 34 0.1237 0.0353 0.3529 4.1 3kl9:B, 3kl9:C, 3kl9:D, 3kl9:E, 3kl9:F, 3kl9:G, 3kl9:H, 3kl9:I, 3kl9:J, 3kl9:K, 3kl9:L
54 6tdu:M 166 28 0.1237 0.0723 0.4286 5.2 6tdu:m, 6tdv:M, 6tdv:m
55 4cej:B 1156 38 0.1546 0.0130 0.3947 7.3 4ceh:B, 4cei:B, 3u44:B, 3u4q:B
56 6jon:A 280 55 0.1237 0.0429 0.2182 8.5 6jop:A, 6joq:A, 6k9a:A, 7rr3:A, 7rr4:A
57 3ozb:A 241 43 0.1443 0.0581 0.3256 9.7 3ozb:B, 3ozb:C, 3ozb:D, 3ozb:E, 3ozb:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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