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BioLiP
>protein
MVVQEGGYLAVLLGVLFPVAFLIILYIQSEARNAGMREAA

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yuu:m2 40 40 1.0000 1.0000 1.0000 2.70e-22 4yuu:m1, 4yuu:M2
2 7y5e:ML 42 35 0.6250 0.5952 0.7143 1.46e-10 7y5e:m6, 7y7a:M9, 7y7a:ME, 7y7a:mO, 7y7a:mZ, 7y7a:Mm
3 8j5k:M 41 33 0.5250 0.5122 0.6364 2.89e-08 8j5k:m
4 8wb4:M 36 33 0.5000 0.5556 0.6061 5.83e-08 8wb4:m
5 8xlp:m 38 33 0.5250 0.5526 0.6364 6.10e-08
6 3a0b:M 36 35 0.4000 0.4444 0.4571 1.13e-04 3a0b:m, 3a0h:M, 3a0h:m, 5b66:M, 7d1u:M, 7d1u:m, 7dxh:m, 8f4f:m, 6jln:M, 6jlo:M, 6jlp:M, 5mx2:m, 1s5l:M, 1s5l:m, 5tis:M, 5v2c:M
7 8wql:MD 36 32 0.4000 0.4444 0.5000 1.26e-04 8wql:ME, 8wql:M1, 8wql:m1, 8wql:mD, 8wql:mE
8 8tow:M 31 29 0.3500 0.4516 0.4828 0.016 8tow:m
9 7ymi:M 31 30 0.3250 0.4194 0.4333 0.063 7ymi:m, 7ymm:1M, 7ymm:2M, 7ymm:3M, 7ymm:4M
10 5xnl:M 33 27 0.2250 0.2727 0.3333 0.33 7oui:M, 7oui:m, 5xnl:m, 5xnm:M, 5xnm:m
11 7pi5:M 32 26 0.2500 0.3125 0.3846 0.59 7pi5:m, 7pin:M, 7pin:m, 7pin:M1, 7pin:m1, 7piw:M, 7piw:m, 7piw:M1, 7piw:m1, 7pnk:M, 7pnk:m
12 8bd3:m 57 26 0.2250 0.1579 0.3462 0.67
13 7pu7:A 1070 21 0.2750 0.0103 0.5238 1.6 5lew:A
14 6kac:M 30 26 0.2250 0.3000 0.3462 1.8 6kac:m, 6kad:M, 6kad:m
15 3mi0:R 239 37 0.3500 0.0586 0.3784 2.8 2fhh:H, 2fhh:C, 2fhh:E, 2fhh:G, 2fhh:J, 2fhh:L, 2fhh:N, 2fhh:P, 2fhh:R, 2fhh:T, 2fhh:V, 2fhh:X, 2fhh:Z, 2fhh:2, 3krd:C, 3krd:E, 3krd:R, 3krd:G, 3krd:N, 3krd:H, 3krd:J, 3krd:L, 3krd:P, 3krd:V, 3krd:T, 3krd:X, 3krd:Z, 3krd:2, 3mi0:C, 3mi0:E, 3mi0:G, 3mi0:H, 3mi0:J, 3mi0:L, 3mi0:N, 3mi0:P, 3mi0:T, 3mi0:V, 3mi0:X, 3mi0:Z, 3mi0:2, 6ocw:H, 6ocw:I, 6ocw:J, 6ocw:K, 6ocw:L, 6ocw:M, 6ocw:N, 6ocw:V, 6ocw:W, 6ocw:X, 6ocw:Y, 6ocw:Z, 6ocw:a, 6ocw:b, 6ocz:H, 6ocz:I, 6ocz:J, 6ocz:K, 6ocz:L, 6ocz:M, 6ocz:N, 6ocz:V, 6ocz:W, 6ocz:X, 6ocz:Y, 6ocz:Z, 6ocz:a, 6ocz:b, 6ode:H, 6ode:I, 6ode:J, 6ode:K, 6ode:L, 6ode:M, 6ode:N, 6ode:V, 6ode:W, 6ode:X, 6ode:Y, 6ode:Z, 6ode:a, 6ode:b, 5tho:H, 5tho:I, 5tho:J, 5tho:K, 5tho:L, 5tho:M, 5tho:N, 5tho:V, 5tho:W, 5tho:X, 5tho:Y, 5tho:Z, 5tho:a, 5tho:b, 5trg:H, 5trg:I, 5trg:J, 5trg:K, 5trg:L, 5trg:M, 5trg:N, 5trg:V, 5trg:W, 5trg:X, 5trg:Y, 5trg:Z, 5trg:a, 5trg:b, 5trr:H, 5trr:I, 5trr:J, 5trr:K, 5trr:L, 5trr:M, 5trr:N, 5trr:V, 5trr:W, 5trr:X, 5trr:Y, 5trr:Z, 5trr:a, 5trr:b, 5trs:H, 5trs:I, 5trs:J, 5trs:K, 5trs:L, 5trs:M, 5trs:N, 5trs:V, 5trs:W, 5trs:X, 5trs:Y, 5trs:Z, 5trs:a, 5trs:b, 5try:H, 5try:I, 5try:J, 5try:K, 5try:L, 5try:M, 5try:N, 5try:V, 5try:W, 5try:X, 5try:Y, 5try:Z, 5try:a, 5try:b, 5ts0:H, 5ts0:I, 5ts0:J, 5ts0:K, 5ts0:L, 5ts0:M, 5ts0:N, 5ts0:V, 5ts0:W, 5ts0:X, 5ts0:Y, 5ts0:Z, 5ts0:a, 5ts0:b, 6wnk:H, 6wnk:I, 6wnk:J, 6wnk:K, 6wnk:L, 6wnk:M, 6wnk:N, 6wnk:V, 6wnk:W, 6wnk:X, 6wnk:Y, 6wnk:Z, 6wnk:a, 6wnk:b
16 6uij:A 620 31 0.2750 0.0177 0.3548 5.1 9cbf:A, 9cbg:A, 9cbi:A, 9cbj:A, 6uhv:A, 6uii:A, 6uil:A, 6uim:A
17 5ifp:A 968 32 0.3000 0.0124 0.3750 5.9 5ift:A, 5ihr:A, 5juv:A, 5mgc:A, 5mgd:A
18 4v4n:AO 197 22 0.2500 0.0508 0.4545 7.7 4v6u:BO
19 7sgg:A 644 16 0.1750 0.0109 0.4375 7.9 9cbh:A, 7kuq:A, 7kur:A, 7kus:A, 7kut:A, 7kuv:A, 7sgi:A, 7sgj:A, 7sgk:A, 5td7:A, 7u3m:A, 7u59:A, 7u69:A, 7u6a:A, 7u6b:B, 6ufn:A, 6ufo:A, 6uhu:A, 6vnq:A, 6wbq:A, 6wdv:A, 6wdw:A, 6wdx:A, 6wdy:A
20 6skf:BQ 164 22 0.2500 0.0610 0.4545 9.2 6skg:BQ, 6th6:BQ

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417