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BioLiP
>protein
MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKR
YESEKELYNATLA

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1j5n:A 93 93 1.0000 1.0000 1.0000 1.90e-64
2 2gzk:A 159 83 0.4086 0.2390 0.4578 2.04e-15 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
3 2gzk:A 159 54 0.2043 0.1195 0.3519 1.72e-05 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
4 6cij:N 133 75 0.3763 0.2632 0.4667 1.39e-12 5zdz:N, 5ze1:N, 5ze2:N
5 6cij:N 133 70 0.2796 0.1955 0.3714 2.48e-07 5zdz:N, 5ze1:N, 5ze2:N
6 4qr9:A 75 70 0.2796 0.3467 0.3714 4.61e-11 4qr9:B
7 1e7j:A 74 62 0.2903 0.3649 0.4355 2.53e-10 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
8 6l6y:D 80 54 0.2151 0.2500 0.3704 4.87e-08 4a3n:A, 3f27:D, 6l6y:F
9 6cik:N 90 85 0.3441 0.3556 0.3765 1.37e-07 6cg0:N, 6cim:N
10 5ze0:N 118 62 0.2688 0.2119 0.4032 5.87e-07 1ckt:A
11 5ze0:N 118 61 0.2796 0.2203 0.4262 0.003 1ckt:A
12 7m5w:A 138 50 0.2151 0.1449 0.4000 1.19e-06 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
13 1gt0:D 79 49 0.1828 0.2152 0.3469 3.74e-06 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
14 4y60:C 76 54 0.1935 0.2368 0.3333 3.79e-06
15 6t78:A 77 54 0.1828 0.2208 0.3148 5.17e-06 6t78:B, 3u2b:C
16 6hb4:A 197 66 0.1828 0.0863 0.2576 5.20e-05 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
17 6hb4:A 197 64 0.2258 0.1066 0.3281 0.069 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
18 5jh0:D 157 52 0.1935 0.1146 0.3462 1.44e-04 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
19 5jh0:D 157 50 0.1720 0.1019 0.3200 0.023 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
20 4s2q:D 76 54 0.1720 0.2105 0.2963 5.02e-04 4euw:A
21 2lef:A 86 49 0.1720 0.1860 0.3265 0.022
22 3my0:K 261 43 0.1505 0.0536 0.3256 1.3 3my0:J, 3my0:X
23 7zie:B 185 61 0.1935 0.0973 0.2951 1.4 7zie:A
24 6jpl:B 231 47 0.1613 0.0649 0.3191 1.4 6jpl:D
25 8hki:G 257 26 0.1505 0.0545 0.5385 2.5 8hki:g, 7nvo:G, 7nvo:g
26 7x3u:G 492 26 0.1505 0.0285 0.5385 2.6 8sfe:g, 8sfe:G, 8sgq:g, 8sgq:G, 7wz3:g, 7wz3:G
27 7nvm:g 538 26 0.1505 0.0260 0.5385 3.6 1gn1:F, 1gn1:H, 8i1u:C, 8i1u:K, 8i6j:C, 8i9u:C, 8i9u:K, 7nvl:G, 7nvl:g, 7nvm:G, 7nvn:G, 7nvn:g, 8sff:G, 8sff:g, 8sg8:G, 8sg8:g, 8sg9:G, 8sg9:g, 8sgc:G, 8sgc:g, 8sgl:G, 8sgl:g, 8sh9:G, 8sh9:g, 8sha:G, 8sha:g, 8shd:G, 8shd:g, 8she:G, 8she:g, 8shf:G, 8shf:g, 8shg:G, 8shg:g, 8shl:G, 8shl:g, 8shn:G, 8shn:g, 8sho:G, 8sho:g, 8shp:G, 8shp:g, 8shq:G, 8shq:g, 8sht:G, 8sht:g, 7trg:H, 7ttn:H, 7ttt:H, 7tub:H, 7x0s:G, 7x0s:N, 7x0v:G, 7x0v:N, 7x3j:G, 7x3j:g, 7x3u:g
28 5npu:A 547 20 0.1183 0.0201 0.5500 3.9 5npu:B, 5npu:C, 5npu:D
29 8p5d:LAA 147 74 0.1935 0.1224 0.2432 5.6 8p60:LAA, 8p60:KAA, 7qca:LAA
30 3my0:N 300 43 0.1505 0.0467 0.3256 6.8 3my0:A, 3my0:B, 3my0:C, 3my0:D, 3my0:E, 3my0:F, 3my0:G, 3my0:H, 3my0:I, 3my0:L, 3my0:M, 3my0:O, 3my0:P, 3my0:Q, 3my0:R, 3my0:S, 3my0:T, 3my0:U, 3my0:V, 3my0:W
31 5lqw:A 2130 73 0.1935 0.0085 0.2466 8.5
32 6i1s:A 322 43 0.1505 0.0435 0.3256 9.7 7a21:A, 7a21:B, 6acr:A, 6acr:B, 4bgg:A, 4bgg:B, 4bgg:C, 4bgg:D, 4c02:A, 7c3g:A, 7c3g:B, 8c7w:A, 8c7z:A, 4dym:A, 6eix:A, 6gi6:A, 6gin:A, 6gin:B, 6gip:A, 3h9r:A, 6jux:A, 3mtf:A, 3mtf:B, 7nns:B, 3oom:A, 5oxg:A, 5oxg:B, 5oxg:C, 5oxg:D, 5oy6:A, 5oy6:B, 5oy6:C, 5oy6:D, 8pod:A, 3q4u:A, 3q4u:B, 3q4u:C, 3q4u:D, 8r7g:A, 8r7g:B, 8r7g:C, 8r7g:D, 5s75:A, 5s75:B, 5s76:A, 5s76:B, 5s77:A, 5s77:B, 5s78:A, 5s78:B, 5s79:A, 5s79:B, 5s7a:A, 5s7a:B, 5s7b:A, 5s7b:B, 5s7c:A, 5s7c:B, 5s7d:A, 5s7d:B, 5s7e:A, 5s7e:B, 5s7f:A, 5s7f:B, 5s7g:A, 5s7g:B, 5s7h:A, 5s7h:B, 5s7i:A, 5s7i:B, 5s7j:A, 5s7j:B, 5s7k:A, 5s7k:B, 5s7l:A, 5s7l:B, 5s7m:A, 5s7m:B, 5s7n:A, 5s7n:B, 5s7o:A, 5s7o:B, 5s7p:A, 5s7p:B, 5s7q:A, 5s7q:B, 5s7r:A, 5s7r:B, 5s7s:A, 5s7s:B, 5s7t:A, 5s7t:B, 5s7u:A, 5s7u:B, 5s7v:A, 5s7v:B, 5s7w:A, 5s7w:B, 5s7x:A, 5s7x:B, 5s7y:A, 5s7y:B, 5s7z:A, 5s7z:B, 5s80:A, 5s80:B, 5s81:A, 5s81:B, 5s82:A, 5s82:B, 5s83:A, 5s83:B, 5s84:A, 5s84:B, 5s85:A, 5s85:B, 5s86:A, 5s86:B, 5s87:A, 5s87:B, 5s88:A, 5s88:B, 5s89:A, 5s89:B, 5s8a:A, 5s8a:B, 5s8b:A, 5s8b:B, 5s9k:A, 5s9k:B, 6srh:A, 6srh:B, 6szm:A, 6szm:B, 6t6d:A, 6t6d:B, 6t6d:C, 6t6d:D, 6t8n:A, 6t8n:B, 6tn8:A, 6unq:A, 6unr:A, 6uns:A, 6uns:B, 6z36:A, 6z36:B, 6zgc:A, 6zgc:B, 6zgc:C, 6zgc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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