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BioLiP
>protein
MVTALQILVFALTILSTILVVSIPVILASPGQWEQSKNLVFTGAGVWSGLVIVTGLLNSF

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7y5e:z6 60 60 1.0000 1.0000 1.0000 2.33e-35 7y5e:ZL, 7y7a:Z9, 7y7a:ZE, 7y7a:zO, 7y7a:zZ, 7y7a:Zm
2 8xlp:z 61 60 0.6500 0.6393 0.6500 1.61e-20 8xlp:Z
3 8wb4:z 61 60 0.6167 0.6066 0.6167 4.95e-18 8wb4:Z, 8xr6:Z, 8xr6:z
4 7oui:Z 62 59 0.5167 0.5000 0.5254 1.81e-16 3jcu:Z, 3jcu:z, 7oui:z, 5xnl:Z, 5xnl:z, 5xnm:Z, 5xnm:z
5 3a0b:Z 62 60 0.4667 0.4516 0.4667 4.97e-14 3a0b:z, 3a0h:Z, 3a0h:z, 2axt:Z, 2axt:z, 5b5e:Z, 5b5e:z, 5b66:Z, 5b66:z, 7cji:Z, 7cji:z, 7cjj:Z, 7cjj:z, 7cou:Z, 7cou:z, 7czl:z, 7d1t:Z, 7d1t:z, 7d1u:Z, 7d1u:z, 6dhe:Z, 6dhe:z, 6dhf:Z, 6dhg:Z, 6dhh:Z, 6dho:Z, 6dhp:Z, 5e79:Z, 5e79:z, 5e7c:Z, 5e7c:z, 7eda:Z, 9evx:Z, 9evx:z, 8ez5:Z, 8f4c:Z, 8f4d:Z, 8f4e:Z, 8f4f:Z, 8f4g:Z, 8f4h:Z, 8f4i:Z, 8f4j:Z, 8f4k:Z, 4fby:Z, 4fby:l, 8gn0:Z, 8gn1:z, 8gn1:Z, 8gn2:Z, 8gn2:z, 5gth:Z, 5gth:z, 5gti:Z, 5gti:z, 5h2f:Z, 5h2f:z, 8ir5:Z, 8ir5:z, 8ir6:Z, 8ir6:z, 8ir7:Z, 8ir7:z, 8ir8:Z, 8ir8:z, 8ir9:Z, 8ir9:z, 8ira:Z, 8ira:z, 8irb:Z, 8irb:z, 8irc:Z, 8irc:z, 8ird:Z, 8ird:z, 8ire:Z, 8ire:z, 8irf:Z, 8irf:z, 8irg:Z, 8irg:z, 8irh:Z, 8irh:z, 8iri:Z, 8iri:z, 4ixq:Z, 4ixq:z, 4ixr:Z, 4ixr:z, 6jlj:Z, 6jlj:z, 6jlk:Z, 6jlk:z, 6jll:Z, 6jll:z, 6jlm:Z, 6jlm:z, 6jln:Z, 6jln:z, 6jlo:Z, 6jlo:z, 6jlp:Z, 6jlp:z, 5kaf:Z, 5kaf:z, 5kai:Z, 5kai:z, 3kzi:Z, 5mx2:Z, 5mx2:z, 7nho:Z, 7nhp:Z, 7nhq:Z, 4pbu:Z, 4pbu:z, 4pj0:Z, 4pj0:z, 7rf1:Z, 7rf2:Z, 7rf3:Z, 7rf4:Z, 7rf4:z, 7rf5:Z, 7rf6:Z, 7rf7:Z, 7rf8:Z, 4rvy:Z, 4rvy:z, 5tis:Z, 4tnh:Z, 4tnh:z, 4tni:Z, 4tni:z, 4tnj:Z, 4tnj:z, 4tnk:Z, 4tnk:z, 4ub6:Z, 4ub6:z, 4ub8:z, 5v2c:Z, 5v2c:z, 4v62:AZ, 4v62:BZ, 4v82:AZ, 4v82:BZ, 6w1o:Z, 6w1p:Z, 6w1q:Z, 6w1q:z, 6w1r:Z, 6w1u:Z, 6w1v:Z, 5ws5:Z, 5ws5:z, 5ws6:Z, 5ws6:z, 3wu2:Z, 3wu2:z, 7yq7:Z, 7yq7:z, 5zzn:Z, 5zzn:z
6 8wql:ZD 60 54 0.4333 0.4333 0.4815 6.52e-13 8wql:ZE, 8wql:Z1
7 7n8o:Z 60 54 0.4333 0.4333 0.4815 3.60e-12 7n8o:z, 7rcv:Z, 7rcv:z, 8tow:Z, 8tow:z
8 7pi5:Z 61 60 0.4500 0.4426 0.4500 1.50e-11 7pi5:z, 7pin:Z, 7pin:Z1, 7pin:z1, 7piw:Z, 7piw:z, 7pnk:Z
9 4yuu:Z2 59 56 0.4167 0.4237 0.4464 7.74e-11 4yuu:z2
10 8iwh:Z 61 52 0.3833 0.3770 0.4423 2.82e-06 8j5k:Z, 8j5k:z, 6jlu:Z, 6jlu:z
11 6j3y:Z 59 49 0.3500 0.3559 0.4286 2.30e-04 6j3y:z, 6j3z:Z, 6j3z:z, 6j40:Z, 6j40:z, 7vd5:Z, 7vd5:z
12 7ymi:Z 59 52 0.2333 0.2373 0.2692 0.016 7ymi:z, 7ymm:1Z, 7ymm:2Z, 7ymm:3Z, 7ymm:4Z
13 8fhd:A 1294 51 0.2667 0.0124 0.3137 0.088
14 8gz2:B 1174 51 0.2667 0.0136 0.3137 0.093 8gz1:B
15 2xzj:A 386 20 0.1667 0.0259 0.5000 0.21 4m4v:A, 2xzi:A, 2xzi:B, 2xzj:B, 2xzk:A, 2xzk:B
16 7w9l:A 1420 51 0.2667 0.0113 0.3137 0.28 8g1a:A, 7w9k:A, 7w9m:A, 7w9p:A, 7w9t:A, 8xmo:A
17 6j8e:A 1139 51 0.2500 0.0132 0.2941 0.29 7dtd:A, 7w77:D, 7w7f:D
18 7xm9:A 1230 51 0.2667 0.0130 0.3137 0.29 6j8g:A, 6j8h:A, 6j8i:A, 6j8j:A, 7xmf:A, 7xmg:A, 8xmm:A
19 8xmn:A 1277 51 0.2667 0.0125 0.3137 0.29 8i5b:A, 8i5g:A, 8i5x:A, 8i5y:A, 8j4f:A, 8s9b:A, 8s9c:A, 8thg:A, 8thh:A, 7xve:A, 7xvf:A
20 6sem:B 530 16 0.1500 0.0170 0.5625 0.36 6sem:A, 6sem:C, 6sem:D, 6sf0:B, 6sf0:A, 6sf0:C, 6sf0:D
21 1xmz:B 231 42 0.2167 0.0563 0.3095 1.8 1xmz:A
22 6agf:A 1138 51 0.2167 0.0114 0.2549 1.9
23 4how:A 559 19 0.1500 0.0161 0.4737 3.2 4hox:A, 4hoz:A, 4hp5:A, 4hph:A
24 3gbe:A 558 19 0.1500 0.0161 0.4737 4.3
25 7al4:D 524 16 0.1167 0.0134 0.4375 9.1 7al4:C, 7al4:B, 7al4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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