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BioLiP
>protein
MVLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDNRTQAAIYAFQHGLAK

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4wu4:B 68 68 1.0000 1.0000 1.0000 3.96e-45 4wu4:A, 4wuh:B, 4wuh:A, 4wul:A, 4wul:B
2 5hev:F 210 67 0.8529 0.2762 0.8657 3.90e-37 5hev:A, 5hev:B, 5hev:C
3 4if4:A 208 64 0.6765 0.2212 0.7188 6.93e-25 4if4:B, 4if4:C, 4if4:D, 7ve5:B, 7ve5:A, 7ve6:A, 7ve6:B
4 1zlk:A 65 55 0.3971 0.4154 0.4909 9.89e-15 1zlk:B
5 4zmr:A 207 65 0.4559 0.1498 0.4769 1.65e-13 4e7o:A, 4e7o:B, 4e7p:A, 4e7p:B, 4zmr:B, 4zms:A, 4zms:B
6 3klo:A 217 59 0.4118 0.1290 0.4746 1.99e-13 3klo:B, 3klo:C
7 4yn8:A 201 60 0.4559 0.1542 0.5167 5.62e-11
8 4ldz:A 196 51 0.3971 0.1378 0.5294 7.58e-11 5iuk:C, 5iul:C, 5iul:F, 4ldz:B, 4le0:A, 4le0:B, 7ssj:B, 7ssj:E, 7ssj:F
9 3qp6:A 258 53 0.3529 0.0930 0.4528 1.55e-09 3qp8:A, 3qp8:B, 3qp8:C, 3qp8:D
10 3qp5:A 251 53 0.3529 0.0956 0.4528 1.95e-09 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
11 1je8:E 67 57 0.4118 0.4179 0.4912 1.13e-08 1je8:A, 1je8:B, 1je8:F, 8u3b:G, 8u3b:H, 1zg1:A, 1zg1:B, 1zg1:E, 1zg1:F, 1zg5:A, 1zg5:B, 1zg5:E, 1zg5:F
12 4y13:A 244 66 0.3971 0.1107 0.4091 8.69e-08 2avx:A, 4y15:A, 4y15:B, 4y15:C, 4y17:A, 4y17:B, 4y17:C
13 6cbq:A 234 60 0.3676 0.1068 0.4167 5.47e-07 6cbq:B, 6cc0:A, 6cc0:B, 3szt:A, 3szt:B
14 7r3g:B 236 60 0.4265 0.1229 0.4833 5.84e-07 7r3g:A, 7r3h:B, 7r3h:A, 7r3i:A, 7r3i:B
15 7r3e:A 545 49 0.3529 0.0440 0.4898 2.07e-06 8b4a:A, 8b4a:B, 8b4a:C, 8b4a:D, 3dh8:A, 8dq0:C, 8dq0:D, 8dq1:C, 8dq1:D, 5hio:A, 5hip:A, 5hiq:A, 5his:A, 7kgw:A, 7kgx:A, 2q0i:A, 2q0j:A, 2q0j:B, 7r3e:B, 7r3f:A, 7r3j:A, 7r3j:B, 7r3j:C, 7r3j:D, 7tz9:A, 7tza:A, 7u6g:A, 2vw8:A
16 1yio:A 198 49 0.3382 0.1162 0.4694 3.25e-06 1zn2:A
17 8a5r:AAA 206 61 0.2941 0.0971 0.3279 8.69e-05 8a5s:AAA, 3p7n:A, 3p7n:B
18 6v7w:E 234 60 0.3529 0.1026 0.4000 1.19e-04 6d6a:A, 6d6a:B, 6d6a:C, 6d6a:D, 6d6a:E, 6d6a:F, 6d6a:G, 6d6a:H, 6d6b:A, 6d6b:B, 6d6b:C, 6d6b:D, 6d6b:E, 6d6b:F, 6d6b:G, 6d6b:H, 6d6c:A, 6d6c:B, 6d6c:C, 6d6c:D, 6d6c:E, 6d6c:F, 6d6c:G, 6d6c:H, 6d6c:I, 6d6c:J, 6d6c:K, 6d6c:L, 6d6d:A, 6d6d:B, 6d6l:A, 6d6l:B, 6d6l:C, 6d6l:D, 6d6m:A, 6d6m:B, 6d6m:C, 6d6m:D, 6d6n:A, 6d6n:B, 6d6n:C, 6d6n:D, 6d6o:A, 6d6o:B, 6d6o:C, 6d6o:D, 6d6p:A, 6d6p:B, 6d6p:C, 6d6p:D, 3ix3:A, 3ix3:B, 3ix4:A, 3ix4:B, 3ix4:C, 3ix4:D, 3ix4:E, 3ix4:F, 3ix4:G, 3ix4:H, 3ix8:A, 3ix8:B, 3ix8:C, 3ix8:D, 3jpu:A, 3jpu:B, 3jpu:C, 3jpu:D, 3jpu:E, 6mvm:A, 6mvm:B, 6mvn:A, 6mvn:B, 6mwh:A, 6mwh:B, 6mwl:A, 6mwl:B, 6mww:A, 6mww:B, 6mwz:A, 6mwz:B, 4ng2:A, 4ng2:B, 4ng2:C, 4ng2:D, 2uv0:E, 2uv0:F, 2uv0:G, 2uv0:H, 6v7w:B, 6v7x:B
19 6ugl:A 200 61 0.2941 0.1000 0.3279 3.40e-04
20 6ide:B 228 61 0.2941 0.0877 0.3279 6.06e-04 6ide:A, 6kju:A, 6kju:B, 6ugl:B
21 5xt2:B 204 60 0.2206 0.0735 0.2500 0.005 5xt2:A, 5xt2:C, 5xt2:D, 5xt2:E
22 5o8z:B 209 47 0.2500 0.0813 0.3617 0.020 5o8z:A, 5vxn:A, 5vxn:B, 5vxn:C, 5vxn:D, 5w43:A, 5w43:B, 6zii:B, 6zii:A, 6zix:B, 6zix:A, 6zj2:D, 6zj2:C, 6zj2:B, 6zj2:A
23 2q0o:A 235 60 0.2647 0.0766 0.3000 0.48 2q0o:B
24 1l3l:B 233 48 0.2059 0.0601 0.2917 0.73 1h0m:A, 1h0m:B, 1h0m:C, 1h0m:D, 1l3l:D, 1l3l:A, 1l3l:C
25 7k5z:A 390 48 0.1912 0.0333 0.2708 2.5 7k5z:B, 7k5z:C, 7k5z:D
26 4ai6:A 2650 43 0.2206 0.0057 0.3488 2.7 4ai6:B, 4akg:A, 4akg:B, 4akh:A, 4akh:B, 4aki:A, 4aki:B, 3crt:A, 3cru:A, 3d0z:A, 1dug:A, 1dug:B, 1gne:A, 1gtb:A, 8gyd:A, 8gyd:B, 5gzz:B, 5gzz:C, 5gzz:D, 5gzz:E, 5gzz:F, 5gzz:G, 6ji6:A, 1m99:A, 1m9a:A, 1m9b:A, 7mi3:A, 7mi6:A, 6rwd:A, 6rwd:B, 1u87:A, 1u88:A, 1ua5:A, 4wr4:A, 4wr5:A
27 1dko:A 410 61 0.2794 0.0463 0.3115 2.8 1dkp:A, 1dkq:A, 4tsr:A, 7z1j:A, 7z2s:A, 7z2t:A, 7z2w:A, 7z2y:A, 7z3v:A
28 8dzz:A 2363 43 0.2206 0.0063 0.3488 3.1 8dzz:D, 8e00:A
29 3c7k:C 311 33 0.2353 0.0514 0.4848 4.2 3c7k:A
30 7qok:A 1361 21 0.1324 0.0066 0.4286 5.1
31 4b09:A 218 65 0.2647 0.0826 0.2769 5.9 4b09:B, 4b09:C, 4b09:D, 4b09:E, 4b09:F, 4b09:G, 4b09:I, 4b09:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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