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BioLiP
>protein
MVIATDDLETTCPNCNGSGREEPEPCPKCLGKGVILTAQGSTLLHFIKKHIHE

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3lcz:A 53 53 1.0000 1.0000 1.0000 1.05e-34 3lcz:B, 3lcz:C, 3lcz:D, 3ld0:A, 3ld0:B, 3ld0:C, 3ld0:D, 3ld0:E, 3ld0:F, 3ld0:G, 3ld0:H, 3ld0:I, 3ld0:J, 3ld0:K, 3ld0:L, 3ld0:M, 3ld0:N, 3ld0:O, 3ld0:P, 3ld0:Q, 3ld0:R, 3ld0:S, 3ld0:T, 3ld0:U, 3ld0:V, 3ld0:W, 3ld0:X, 3ld0:Y, 3ld0:Z, 3ld0:1, 3ld0:2, 3ld0:3, 3ld0:4, 3ld0:5, 3ld0:6, 3ld0:7, 3ld0:8, 3ld0:9, 3ld0:a, 3ld0:b, 3ld0:c, 3ld0:d, 3ld0:e, 3ld0:f, 3ld0:g, 3ld0:h, 3ld0:i, 3ld0:j, 3ld0:k, 3ld0:l, 3ld0:m
2 2bx9:A 53 53 0.6604 0.6604 0.6604 2.84e-20 2bx9:B, 2bx9:C, 2bx9:D, 2bx9:E, 2bx9:F, 2bx9:G, 2bx9:H, 2bx9:I, 2bx9:J, 2bx9:K, 2bx9:L, 2ko8:A, 2ko8:B, 2ko8:C, 2zp8:E, 2zp8:F, 2zp8:G, 2zp8:H, 2zp8:I, 2zp8:J, 2zp9:E
3 2zp9:C 46 52 0.6226 0.7174 0.6346 8.40e-17 2zp9:M, 2zp9:O, 2zp9:D, 2zp9:I, 2zp9:J
4 6knb:B 1120 35 0.2642 0.0125 0.4000 0.077 6knc:B
5 1exk:A 79 28 0.2264 0.1519 0.4286 0.094
6 1exk:A 79 34 0.2264 0.1519 0.3529 0.97
7 1exk:A 79 32 0.2453 0.1646 0.4062 1.1
8 7zhs:A 242 30 0.2453 0.0537 0.4333 0.15 7zhs:C, 7zhs:B, 7zhs:D, 7zhs:E, 7zhs:G, 7zhs:F, 7zhs:H, 7zhs:I, 7zhs:Q, 7zhs:M, 7zhs:U, 7zhs:Y, 7zhs:g, 7zhs:c, 7zhs:k, 7zhs:J, 7zhs:R, 7zhs:N, 7zhs:V, 7zhs:Z, 7zhs:h, 7zhs:d, 7zhs:l, 7zhs:K, 7zhs:S, 7zhs:O, 7zhs:W, 7zhs:a, 7zhs:i, 7zhs:e, 7zhs:m, 7zhs:L, 7zhs:T, 7zhs:P, 7zhs:X, 7zhs:b, 7zhs:j, 7zhs:f, 7zhs:n
9 8c8v:A 1032 19 0.1698 0.0087 0.4737 0.18 8c8u:A, 8c8w:A, 8c9d:A
10 6jzb:A 251 30 0.2642 0.0558 0.4667 0.61
11 6jzb:A 251 25 0.2075 0.0438 0.4400 1.4
12 8ppt:B 1191 35 0.2453 0.0109 0.3714 0.84 8ppu:B, 8ppv:B, 6t8h:B
13 7sh1:A 626 24 0.1887 0.0160 0.4167 1.9 7sh1:B
14 2bte:A 876 16 0.1321 0.0080 0.4375 4.5 2bte:D, 2byt:A, 2byt:D, 1h3n:A, 1obc:A, 2v0c:A, 2v0g:A, 2v0g:D
15 8qkh:A 268 33 0.1887 0.0373 0.3030 4.9 8q01:S, 8qek:S, 8qgr:B
16 6q89:A 852 16 0.1321 0.0082 0.4375 5.1 7ntz:A, 7nu3:A, 7nu6:A, 7nu7:A, 7nub:A, 6q8b:A, 6q8c:A
17 7nu2:A 875 16 0.1321 0.0080 0.4375 5.1 7a0p:A, 7ap2:A, 7nty:A, 7nu0:A, 7nu1:A, 7nu4:A, 7nu5:A, 7nu8:A, 7nu9:A, 7nua:A, 7nuc:A, 6q8a:A, 6ykk:A, 6ykl:A, 6ykn:A, 6yko:A, 6ykq:A, 6yks:A, 6ykt:A, 6yku:A, 6ykv:A, 6ykw:A, 6ykx:A, 7yp8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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