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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVHIPKAVYKAVYAHLYENASLALKEYWRVGNVPGITYVDENGKLCNPTYLHVNCIMQSLESRGVVKDTFAWRHHYYLLT
EKGEQFIRKELDLTDDV

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bsj:SL 109 96 0.9897 0.8807 1.0000 1.03e-69 8br8:SL, 8brm:SL, 8bsi:SL, 8btd:SL, 8btr:SL, 8fvy:K, 8g4s:K
2 7pwf:K 83 94 0.8557 1.0000 0.8830 4.83e-56
3 4v6w:AK 95 94 0.3608 0.3684 0.3723 1.16e-12
4 6xu6:AK 90 94 0.3299 0.3556 0.3404 5.67e-12 6xu7:AK, 6xu8:AK
5 9bkd:a 99 94 0.3608 0.3535 0.3723 2.48e-11 7a01:E3, 7a09:u, 5a2q:K, 5aj0:BK, 9bdl:AS10, 9bdn:AS10, 9bdp:AS10, 8bhf:L3, 9bln:a, 8btk:Aj, 7cpu:SK, 7cpv:SK, 4d5l:K, 4d61:K, 6d90:LL, 6d9j:LL, 9f1b:Aj, 9f1c:Aj, 9f1d:Aj, 6fec:t, 5flx:K, 6g51:K, 6g53:K, 6g5h:K, 6g5i:K, 8g5y:SK, 8g5z:SK, 8g60:SK, 8g61:SK, 8g6j:SK, 8glp:SK, 6gz3:BK, 6gz4:BK, 6gz5:BK, 6hcf:L1, 6hcj:L2, 6hcm:L1, 6hcq:L2, 8ifd:2u, 8ife:2u, 6ip5:2u, 6ip6:2u, 6ip8:2u, 3j7p:SK, 3j7r:SK, 3jag:KK, 3jah:KK, 3jai:KK, 3jaj:SK, 3jan:SK, 8jdj:7, 8jdk:7, 8jdl:7, 8jdm:7, 7jqb:L, 7jqc:L, 5k0y:t, 8k2c:SK, 7k5i:K, 4kzx:K, 4kzy:K, 4kzz:K, 5lks:SK, 7ls1:v2, 7ls2:v2, 5lzs:KK, 5lzt:KK, 5lzu:KK, 5lzv:KK, 5lzw:KK, 5lzx:KK, 5lzy:KK, 5lzz:KK, 7mdz:KK, 6mtb:KK, 6mtc:KK, 6mtd:KK, 6mte:KK, 7nwg:L2, 7nwh:KK, 7nwi:KK, 7o7y:Aj, 7o7z:Aj, 7o80:Aj, 7o81:Aj, 5oa3:K, 6ole:SK, 6olf:SK, 6olg:BK, 6oli:SK, 6olz:BK, 6om0:SK, 6om7:SK, 7oya:K2, 7oyb:K2, 7oyc:K2, 7oyd:KK, 8oz0:i, 8p03:M, 8p09:M, 8p2k:Aj, 6p4g:L, 6p4h:L, 6p5i:L, 6p5j:L, 6p5k:L, 6p5n:L, 8pj1:a, 8pj2:a, 8pj3:a, 8pj4:a, 8pj5:a, 8pj6:a, 8ppk:K, 8ppl:AK, 8q7z:Aj, 8q87:Aj, 7qgg:SK, 8qoi:SK, 7qp6:a, 7qp7:a, 7qvp:SK, 7qvp:RK, 6qzp:SK, 7r4x:K, 6r5q:SS, 6r6g:SS, 6r6p:SS, 6r7q:SS, 8scb:KK, 6sgc:L1, 7syg:L, 7syh:L, 7syi:L, 7syj:L, 7syk:L, 7syl:L, 7sym:L, 7syn:L, 7syo:L, 7syp:L, 7syq:L, 7syr:L, 7sys:L, 7syt:L, 7syu:L, 7syv:L, 7syw:L, 7syx:L, 5t2c:Av, 8t4s:K, 7toq:AS10, 7tor:AS10, 7tql:M, 7ucj:KK, 7uck:KK, 4ug0:SK, 4ujc:CK, 4ujd:CK, 4uje:BK, 4v6x:AK, 5vyc:K1, 5vyc:K2, 5vyc:K3, 5vyc:K4, 5vyc:K5, 5vyc:K6, 6w2s:L, 6w2t:L, 6xa1:SK, 7xnx:SK, 7xny:SK, 8xsx:SK, 8xsy:SK, 8xsz:SK, 8xxl:SK, 8xxm:SK, 8xxn:SK, 6y0g:SK, 8y0w:SK, 8y0x:SK, 6y2l:SK, 6y57:SK, 6yal:M, 6yam:M, 6yan:M, 6ybs:a, 8yoo:SK, 8yop:SK, 6z6l:SK, 6z6m:SK, 6z6n:SK, 7zjw:SV, 7zjx:SV, 6zlw:M, 6zm7:SK, 6zme:SK, 6zmi:SK, 6zmo:SK, 6zmt:M, 6zmw:a, 6zn5:M, 6zoj:K, 6zol:K, 6zon:u, 6zp4:u, 6zuo:K, 6zv6:K, 6zvh:K, 6zvj:u, 6zvk:E3, 6zxd:K, 6zxe:K, 6zxf:K, 6zxg:K, 6zxh:K
6 5xxu:K 94 94 0.2887 0.2979 0.2979 3.23e-11
7 4v8m:AD 103 100 0.3608 0.3398 0.3500 1.43e-10 8ova:AD, 8ove:AD
8 6fyx:K 96 94 0.3299 0.3333 0.3404 1.45e-10 6fyy:K, 6gsm:K, 6gsn:K, 8i7j:K, 5it7:K, 5it9:K, 3j80:K, 3j81:K, 3jam:K, 3jap:K, 8rw1:K, 8s8d:K, 8s8e:K, 8s8f:K, 8s8g:K, 8s8h:K, 8s8i:K, 8s8j:K, 6uz7:K
9 7ase:N 93 56 0.2268 0.2366 0.3929 7.99e-10 5opt:n
10 8c3a:M 98 94 0.2990 0.2959 0.3085 1.26e-09 8c3a:CX, 8cgn:n, 8cq7:M, 8cq7:CX, 8cqw:M, 8cqw:CX, 8cre:M, 8cre:CX, 8oeq:M, 8oeq:CX, 7pzy:L, 7q08:L, 7q0f:L, 7q0p:L, 7q0r:L, 8q5i:L
11 9bh5:AK 93 94 0.3093 0.3226 0.3191 4.78e-09 9cai:AK
12 7qiy:F 92 94 0.2680 0.2826 0.2766 2.80e-08 8auv:l, 8b2l:l1, 7qiz:PA
13 8a98:SN 101 96 0.2784 0.2673 0.2812 4.55e-08 8a3w:SN, 6az1:N, 8ovj:SN, 8rxh:SN, 8rxx:SN, 5t2a:AD
14 8bn3:C0 96 47 0.2062 0.2083 0.4255 4.77e-08 7a1g:C, 7b7d:C, 8bqd:C, 8bqx:C, 8cah:C, 8cas:D, 8ccs:n, 8cdl:n, 8cdr:n, 8cf5:n, 8cku:n, 5dat:C0, 5dat:c0, 5dc3:C0, 5dc3:c0, 5dge:C0, 5dge:c0, 5dgf:C0, 5dgf:c0, 5dgv:C0, 5dgv:c0, 8eub:BK, 8evp:BK, 8evq:BK, 8evr:BK, 8evs:BK, 8evt:BK, 8ewb:BK, 8ewc:BK, 5fci:C0, 6gq1:AA, 6gqb:AA, 6gqv:AA, 6hhq:L, 6hhq:c0, 5i4l:C0, 5i4l:c0, 6i7o:C, 6i7o:Cb, 3j6x:10, 3j6y:10, 3j77:10, 3j78:10, 5juo:HB, 5jup:HB, 5jus:HB, 5jut:HB, 5juu:HB, 8k2d:SK, 8k82:SK, 5m1j:K2, 5mc6:C, 5mei:c0, 5mei:L, 7mpi:BK, 7mpj:BK, 7n8b:BK, 5ndg:C0, 5ndg:c0, 5ndv:C0, 5ndv:c0, 5ndw:C0, 5ndw:c0, 7nrc:SC, 7nrd:SC, 5obm:C0, 5obm:c0, 5on6:c0, 5on6:L, 7osa:eS10, 6q8y:C, 6rbe:K, 7rr5:SK, 6s47:BL, 6snt:K, 6sv4:C, 6sv4:Cb, 6sv4:Cc, 6t4q:SK, 6t7i:SK, 6t7t:SK, 6t83:Kb, 6t83:l, 5tbw:L, 5tbw:c0, 6tb3:C, 5tga:C0, 5tgm:C0, 5tgm:c0, 6tnu:C, 4u3m:C0, 4u3m:c0, 4u3n:C0, 4u3n:c0, 4u3u:C0, 4u3u:c0, 4u4n:C0, 4u4n:c0, 4u4o:C0, 4u4o:c0, 4u4q:C0, 4u4q:c0, 4u4r:C0, 4u4r:c0, 4u4u:C0, 4u4u:c0, 4u4y:C0, 4u4y:c0, 4u4z:C0, 4u4z:c0, 4u50:C0, 4u50:c0, 4u51:C0, 4u51:c0, 4u52:C0, 4u52:c0, 4u53:C0, 4u53:c0, 4u55:C0, 4u55:c0, 4u56:C0, 4u56:c0, 4u6f:C0, 4u6f:c0, 4uer:7, 4v88:AK, 4v88:CK, 4v8y:AK, 4v8z:AK, 4v92:BK, 6wdr:K, 6woo:KK, 6xiq:AA, 6xir:AA, 6z6j:SK, 6z6k:SK, 6zce:L, 7zpq:AK, 7zrs:AK, 6zu9:D, 7zuw:AK, 7zux:DK, 6zvi:s, 7zw0:sC
15 7r81:L2 90 94 0.2990 0.3222 0.3085 5.81e-08 7olc:SK, 7old:SK, 8oo0:SK, 7z3n:SK, 7z3o:SK
16 5fci:c0 96 45 0.2062 0.2083 0.4444 7.82e-08 5fcj:C0, 5fcj:c0, 5lyb:C0, 5lyb:c0, 5tga:c0
17 3j7a:O 79 87 0.2165 0.2658 0.2414 4.13e-07 3jbn:O, 3jbo:O, 3jbp:O, 6okk:O, 8tpu:SO
18 6zj3:SN 92 42 0.1649 0.1739 0.3810 1.04e-06
19 4v7e:BK 96 94 0.2577 0.2604 0.2660 1.07e-06 8ip8:da, 8ip9:da, 8ipa:da, 8ipb:da, 8jiw:BK, 8r57:K
20 7qep:C0 81 41 0.1856 0.2222 0.4390 7.17e-06
21 6zu5:SK0 74 80 0.2784 0.3649 0.3375 7.54e-05
22 4v5o:A7 104 95 0.2474 0.2308 0.2526 8.50e-05 4bts:A7, 4bts:B7, 4bts:C7, 4bts:D7, 4v5o:B7
23 5xyi:K 90 65 0.2165 0.2333 0.3231 1.39e-04
24 7qca:SK0 91 44 0.1753 0.1868 0.3864 1.71e-04 8p5d:SK0, 8p60:SK0, 8p60:RK0
25 8ceh:n 33 22 0.1237 0.3636 0.5455 0.015 8cg8:n, 8civ:n, 8cmj:n, 7osm:eS10
26 6rm3:SK0 85 39 0.1134 0.1294 0.2821 0.050
27 8cm5:A 974 55 0.1031 0.0103 0.1818 2.0 8bqg:A, 8bqh:A, 8bqi:A, 8bqj:A, 8bqk:A, 8bql:A, 8cm4:A, 8cm4:C, 8cm5:C, 8cm5:K, 8cm5:R, 8cm6:A, 8cm6:C, 8cm7:A, 8rc8:A, 8rc9:A, 8rca:A, 8rcb:A, 8rcc:A, 8rcg:A, 6sdr:A, 6sdv:A, 7z5o:AAA
28 1wvl:A 80 56 0.1856 0.2250 0.3214 3.8 1azp:A, 1azq:A, 1ca5:A, 1ca6:A, 8cmn:AA, 8q2m:AA, 8qpc:AA, 1wd0:A, 1wd1:A, 1wto:A, 1wtp:A, 1wtp:B, 1wtq:A, 1wtr:A, 1wtv:A, 1wtw:A, 1wtx:A, 1xyi:A
29 5v95:A 592 53 0.1237 0.0203 0.2264 4.7
30 3dt7:A 624 53 0.1237 0.0192 0.2264 4.7 3dt2:A, 3dt4:A, 3dt4:C, 3dt7:B, 3dtb:A, 3dtb:B, 5fh0:A, 5fh1:A, 5fh2:A, 5fh3:A, 5fh4:A, 5fh5:A, 2gmv:A, 2gmv:B, 4gmm:A, 4gmu:A, 4gmw:A, 4gmz:A, 4gnl:A, 4gnm:A, 4gno:A, 4gnp:A, 4gnq:A, 1khb:A, 1khe:A, 1khf:A, 1khg:A, 7l36:A, 7l3m:A, 7l3v:A, 1m51:A, 3moe:A, 3mof:A, 3mof:B, 3moh:A, 3moh:B, 1nhx:A, 4ox2:A, 4ox2:B, 6p5o:A, 2qew:A, 2qey:A, 2qf1:A, 2qf2:A, 2qf2:B, 2rk7:A, 2rk7:B, 2rk8:A, 2rk8:B, 2rka:A, 2rka:C, 2rkd:A, 2rke:A, 5v97:A, 5v9f:A, 5v9g:A, 5v9h:A, 5v9h:B, 4yw8:A, 4yw9:A, 4ywb:A, 4ywb:C, 4ywd:A
31 6b4i:F 426 61 0.2062 0.0469 0.3279 4.9 6b4i:E, 6b4j:E, 6b4j:F, 6b4k:A, 6b4k:B, 3ews:A, 3ews:B, 3fht:A, 3fht:B, 3fmo:B, 3fmp:B, 3fmp:D, 3g0h:A
32 3acs:A 822 53 0.1340 0.0158 0.2453 6.6 3acs:B, 3act:A, 3act:B, 3afj:A, 3afj:B, 2cqs:A, 2cqs:B, 2cqt:A, 2cqt:B, 3qfy:A, 3qfy:B, 3qfz:A, 3qfz:B, 3qg0:A, 3qg0:B
33 3s4a:A 822 53 0.1340 0.0158 0.2453 6.8 3s4a:B, 3s4b:A, 3s4b:B, 3s4d:A
34 6yjt:AAA 513 53 0.1959 0.0370 0.3585 7.6 8ce3:A, 6yjt:BBB, 6yju:AAA, 6yju:BBB, 6yjv:AAA, 6yjv:BBB, 5zic:B
35 6yjs:BBB 486 53 0.1959 0.0391 0.3585 8.3 6yjs:AAA
36 4xb8:A 391 21 0.0928 0.0230 0.4286 8.7 4xb8:B
37 4x8x:B 393 21 0.0928 0.0229 0.4286 8.8 4x8x:A, 4x9f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417