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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAG
VLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAE
YLNGDYHDVNMYARIIDAD

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1s7n:B 179 179 1.0000 1.0000 1.0000 1.16e-136 1s7l:A, 1s7n:A, 1s7n:C, 1s7n:D
2 3r95:A 180 172 0.3743 0.3722 0.3895 6.66e-41 3r95:B, 3r96:A, 3r96:B, 3r9e:A, 3r9e:B, 3r9f:A, 3r9f:B, 3r9g:A, 3r9g:B
3 6c32:A 209 157 0.2067 0.1770 0.2357 5.30e-06 6c37:A
4 2vi7:C 165 170 0.2402 0.2606 0.2529 1.34e-04
5 3ld2:B 162 153 0.1788 0.1975 0.2092 2.17e-04 3ld2:A, 3ld2:C, 3ld2:D
6 6d72:B 176 170 0.1899 0.1932 0.2000 7.71e-04 6d72:A
7 6vfn:A 167 163 0.1788 0.1916 0.1963 8.71e-04 6vfn:F, 6vfn:B, 6vfn:C, 6vfn:D, 6vfn:E, 6vfn:H, 6vfn:I, 6vfn:J, 6vfn:G, 6vfn:L, 6vfn:K
8 3wr7:A 170 99 0.1006 0.1059 0.1818 0.002 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
9 8gxk:B 188 175 0.2346 0.2234 0.2400 0.035 8gxk:A, 8gxk:C, 8gxk:D
10 2vzz:A 210 89 0.1285 0.1095 0.2584 0.082 2vzy:A, 2vzy:B, 2vzy:D, 2vzz:B, 2vzz:C, 2vzz:D
11 2vzy:C 189 89 0.1285 0.1217 0.2584 0.088
12 2i79:A 171 110 0.1341 0.1404 0.2182 0.10 2i79:B, 2i79:C, 2i79:D, 2i79:E, 2i79:F
13 4xpl:A 141 96 0.1341 0.1702 0.2500 0.43
14 5u1o:B 451 77 0.1061 0.0421 0.2468 2.2 5u1o:A, 5u1o:C, 5u1o:D
15 8p5r:C 1109 158 0.1844 0.0298 0.2089 2.6 6i2q:A, 6i2r:A, 6i2r:C, 6i2s:A, 8p5r:A, 8p5r:B, 8p5r:D, 8p5r:E, 8p5r:F, 6r2b:A, 6r2b:D, 6r2c:A, 6r2c:B, 6r2c:C, 6r2c:D, 6r2d:A, 6r2d:B, 6r2d:C, 6r2d:D, 2xt6:A, 2xt6:B, 2xta:A, 2xta:B, 2xta:C, 2xta:D, 2y0p:D, 2yic:A, 2yic:B, 2yic:C, 2yic:D, 2yid:A, 2yid:B, 2yid:C, 2yid:D, 3zhq:A, 3zhq:B, 3zhq:C, 3zhq:D, 3zhr:A, 3zhr:B, 3zhr:C, 3zhr:D, 3zhs:A, 3zhs:B, 3zhs:C, 3zhs:D, 3zht:A, 3zht:B, 3zht:C, 3zht:D, 3zhu:A, 3zhu:B, 3zhu:C, 3zhu:D, 3zhv:A, 3zhv:B, 3zhv:C, 3zhv:D
16 7y6c:D 71 45 0.0726 0.1831 0.2889 4.1 7y6c:A
17 6e1x:C 176 165 0.1676 0.1705 0.1818 5.7 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
18 2pfr:A 290 60 0.0838 0.0517 0.2500 5.8 2pfr:B
19 5g0y:B 377 41 0.0670 0.0318 0.2927 7.5 5g0x:A, 5g0x:C, 5g0y:A, 5g10:A, 5g10:B, 5g11:A, 5g11:B, 5g12:A, 5g12:B, 5g13:A, 5g13:B, 5li3:A, 5li3:B
20 6tah:B 213 29 0.0726 0.0610 0.4483 9.3 4ecj:A, 4ecj:B, 6tah:AAA, 6tah:CAA, 6tah:DAA
21 6j0x:B 466 112 0.1508 0.0579 0.2411 9.9 6j0w:A, 6j0w:B, 6j0x:A, 6j0x:C, 6j0x:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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