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BioLiP
>protein
MVALKGIPKVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPVEIRADGLDIPQLLEAVLRLLPLDTYVESPAAVMD
LVPSDKEKGLQTPIWKRYESLLLEADCKKTLMKLERFEFYERAKKAFAVVATGEMALYGNIILKKGTLD

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wcu:A 149 149 1.0000 1.0000 1.0000 2.11e-107 2wcu:B
2 4a34:I 142 147 0.5034 0.5282 0.5102 9.85e-44 4a34:A, 4a34:B, 4a34:C, 4a34:D, 4a34:E, 4a34:F, 4a34:G, 4a34:H, 4a34:J, 4a34:K, 4a34:O, 4a34:L, 4a34:M, 4a34:N, 4a34:P, 4a34:Q, 4a34:R, 4a34:S, 4a34:T
3 2wcv:B 140 145 0.4832 0.5143 0.4966 6.57e-37 2wcv:A, 2wcv:C, 2wcv:D, 2wcv:E, 2wcv:F, 2wcv:G, 2wcv:H, 2wcv:I, 2wcv:J
4 1ogd:A 131 142 0.3087 0.3511 0.3239 3.62e-05 1ogd:B, 1ogd:C, 1ogd:D, 1ogd:E, 1oge:A, 1oge:B, 1oge:C, 1oge:D, 1oge:E
5 6ywe:L 192 75 0.1544 0.1198 0.3067 0.29 6yws:L, 6ywv:L, 6ywx:L, 6ywy:L
6 7va8:A 456 59 0.1208 0.0395 0.3051 0.46 7va8:B, 7vaa:A, 7vaa:B
7 1gws:A 503 122 0.2013 0.0596 0.2459 3.3 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
8 3on0:A 121 59 0.1074 0.1322 0.2712 8.0 3omy:B, 3on0:B, 3on0:C, 3on0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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