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BioLiP
>protein
MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV
AMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVEVDT
THKESIECAWAIAAHVVP

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1grq:A 178 178 1.0000 1.0000 1.0000 5.12e-127 1grr:A, 1qhn:A, 1qhs:A, 1qhx:A, 1qhy:A
2 1zny:A 183 39 0.0899 0.0874 0.4103 0.020 1znx:A, 1znz:A
3 5u30:A 1085 142 0.1966 0.0323 0.2465 0.40 5u31:A, 5u33:A
4 2xsp:A 440 44 0.0899 0.0364 0.3636 4.4 2yg1:A, 2yg1:B
5 3vkg:B 2853 43 0.0899 0.0056 0.3721 6.4
6 3vkh:B 2908 43 0.0899 0.0055 0.3721 6.4
7 3vkg:A 2954 43 0.0899 0.0054 0.3721 6.4
8 3vkh:A 3042 43 0.0899 0.0053 0.3721 6.4
9 6zns:A 635 44 0.0899 0.0252 0.3636 7.6
10 6znq:B 711 44 0.0899 0.0225 0.3636 7.7 6znp:B
11 6znp:A 748 44 0.0899 0.0214 0.3636 7.7 6znq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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