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BioLiP
>protein
MTPSLSAFINSLLLGLFVVVIPIGAALFLVSQSDRVTRT

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8wb4:X 39 39 1.0000 1.0000 1.0000 4.71e-21 8wb4:x, 8xr6:X, 8xr6:x
2 8xlp:x 36 36 0.7179 0.7778 0.7778 2.93e-14 8xlp:X
3 7n8o:X 38 38 0.4872 0.5000 0.5000 1.39e-07 7n8o:x, 7rcv:X, 7rcv:x, 8tow:X, 8tow:x, 6wj6:X
4 8wql:XD 40 38 0.4615 0.4500 0.4737 6.42e-07 8wql:XE, 8wql:X1, 8wql:x1, 8wql:xD, 8wql:xE
5 7vd5:X 37 38 0.5385 0.5676 0.5526 3.02e-04 6jlu:X, 6jlu:x, 7vd5:x
6 2ve3:A 435 33 0.3077 0.0276 0.3636 5.7 2ve3:B, 2ve4:A, 2ve4:B
7 6ru1:B 386 14 0.2308 0.0233 0.6429 6.0 6ru2:A, 6ru2:B, 6rv7:B, 6rv8:B, 6rv8:A, 6rv9:B
8 8g27:I 720 21 0.2308 0.0125 0.4286 9.5 8g27:C, 8g27:D, 8g2j:C, 8g2j:D, 8g2j:I, 6wlb:A, 6wlb:C, 6wlb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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