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BioLiP Library
>protein
MTPSLANFLWSLVLGAAIVLIPATVGLIFISQKDKITR

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7n8o:X 38 38 1.0000 1.0000 1.0000 2.58e-21 7n8o:x, 7rcv:X, 7rcv:x, 8tow:X, 8tow:x, 6wj6:X
2 8wql:XD 40 38 0.7105 0.6750 0.7105 2.52e-14 8wql:XE, 8wql:X1, 8wql:x1, 8wql:xD, 8wql:xE
3 8wb4:X 39 38 0.5000 0.4872 0.5000 1.36e-07 8wb4:x, 8xr6:X, 8xr6:x
4 7vd5:X 37 38 0.4737 0.4865 0.4737 1.09e-04 6jlu:X, 6jlu:x, 7vd5:x
5 8xlp:x 36 36 0.4211 0.4444 0.4444 1.19e-04 8xlp:X
6 4il6:X 40 38 0.4474 0.4250 0.4474 0.057 3a0b:X, 3a0b:x, 5b5e:X, 5b5e:x, 5b66:X, 5b66:x, 7d1t:X, 7d1t:x, 7d1u:X, 7d1u:x, 6dhe:X, 6dhf:X, 6dhh:X, 6dho:X, 6dhp:X, 5e79:X, 5e7c:X, 5e7c:x, 7eda:X, 8ez5:X, 8ez5:x, 8f4d:X, 8f4d:x, 8f4e:X, 8f4f:X, 8f4f:x, 8f4g:X, 8f4h:X, 8f4i:X, 8f4i:x, 8f4j:X, 8f4j:x, 8f4k:X, 8gn0:x, 8gn1:x, 8gn2:x, 5h2f:X, 5h2f:x, 4il6:x, 8ir5:X, 8ir6:x, 8ir8:x, 8ira:X, 8irc:x, 8ird:x, 8ire:x, 8irf:x, 8iri:X, 8iri:x, 4ixr:X, 6jlj:X, 6jlj:x, 6jlk:X, 6jlk:x, 6jll:x, 6jlm:x, 6jln:X, 6jln:x, 6jlp:X, 6jlp:x, 5kaf:X, 5kai:X, 5kai:x, 3kzi:X, 5mx2:x, 4pbu:X, 4pbu:x, 7rf1:x, 7rf2:X, 7rf3:X, 7rf4:X, 7rf4:x, 7rf5:X, 7rf6:X, 7rf7:X, 7rf8:X, 7rf8:x, 4rvy:X, 4rvy:x, 5tis:x, 4ub6:X, 4ub8:X, 5v2c:X, 5v2c:x, 4v62:AX, 4v62:BX, 6w1o:X, 6w1o:x, 6w1p:X, 6w1r:X, 6w1t:X, 6w1u:X, 6w1v:X, 6w1v:x, 3wu2:X, 3wu2:x, 7yq2:X, 7yq2:x, 7yq7:x, 5zzn:x
7 7pi0:X 30 18 0.3158 0.4000 0.6667 0.12 7pi0:x, 7pi5:X, 7pi5:x, 7pin:X, 7pin:X1, 7pin:x1, 7piw:X, 7piw:x, 7piw:x1, 7pnk:X, 7pnk:x
8 6kaf:x 35 19 0.2895 0.3143 0.5789 0.14 6kaf:X, 8kde:X, 8zee:X
9 5xnl:X 39 39 0.4211 0.4103 0.4103 0.39 5xnl:x
10 8rqf:A 301 28 0.2368 0.0299 0.3214 2.9 7zyi:A
11 5egp:A 282 31 0.3684 0.0496 0.4516 3.5 5egp:B, 5jgk:A, 5jgk:B, 5jgl:A, 5jgl:B
12 8i34:A 175 30 0.3684 0.0800 0.4667 4.0 8i34:C, 8i34:E, 8i34:G
13 7r0h:A 654 23 0.2368 0.0138 0.3913 4.3 3a1c:A, 3a1c:B, 3a1d:A, 3a1d:B, 3a1e:A, 3a1e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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