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BioLiP
>protein
MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHF
KPGKELRDRANIYG

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ihf:B 94 94 0.9894 0.9894 0.9894 4.44e-66 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
2 8flj:F 94 91 0.7021 0.7021 0.7253 1.19e-45 8flj:H
3 2iie:A 204 55 0.5745 0.2647 0.9818 3.03e-35 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
4 4qju:A 90 88 0.3723 0.3889 0.3977 1.83e-19 4qju:B
5 6o8q:B 91 88 0.3191 0.3297 0.3409 1.95e-16 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
6 1p71:A 94 89 0.3191 0.3191 0.3371 3.11e-14 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
7 8flj:G 98 94 0.3191 0.3061 0.3191 7.41e-14 8flj:E
8 2np2:A 102 95 0.2979 0.2745 0.2947 5.11e-12 2np2:B
9 4dky:B 101 87 0.3191 0.2970 0.3448 6.25e-09
10 6oaj:B 79 88 0.2553 0.3038 0.2727 2.64e-07 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
11 6lmj:A 99 70 0.2021 0.1919 0.2714 1.5 6lmj:B
12 3ula:A 276 33 0.1064 0.0362 0.3030 2.1 3ula:C
13 1lbg:A 357 59 0.1915 0.0504 0.3051 2.1 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
14 8ova:AQ 100 40 0.1489 0.1400 0.3500 2.3 8ove:AQ
15 6yxx:EM 308 44 0.1489 0.0455 0.3182 2.7
16 6yxy:EM 330 44 0.1489 0.0424 0.3182 3.6
17 6knb:B 1120 67 0.1915 0.0161 0.2687 4.0 6knc:B
18 4g8a:B 605 33 0.1064 0.0165 0.3030 5.0 4g8a:A
19 5lhd:C 905 37 0.1489 0.0155 0.3784 5.2 6atk:C, 6atk:A, 6atk:B, 4fyq:A, 4fyr:A, 4fys:A, 4fyt:A, 5lhd:D, 5lhd:A, 5lhd:B, 6u7e:A, 6u7e:B, 6u7f:A, 6u7f:B, 6u7g:A, 6u7g:B, 7vpq:A, 7vpq:C, 7vpq:E
20 8uux:B 515 52 0.1702 0.0311 0.3077 5.2 6c6q:A, 6c6q:B, 6e47:A, 6e47:B, 6e48:A, 6e48:B, 6h6l:A, 6h6l:B, 6h6l:C, 6h6l:D, 6h6m:A, 6h6m:B, 6h6m:C, 6h6m:D, 6p4j:A, 6p4j:B, 6p4j:C, 6p4k:A, 6p4k:B, 6p4k:C, 8uux:A, 8uv3:A, 8uv3:C, 6xw6:A, 6xw6:B, 6xw7:A, 6xw7:B, 6xw7:E, 6xw7:F
21 7e2i:D 907 41 0.1489 0.0154 0.3415 6.0 7e2g:D, 7e2h:E
22 8glw:A 483 52 0.1702 0.0331 0.3077 6.1 8glu:G, 8glu:F, 8glu:E, 8glw:E, 8glw:F, 8glw:B, 8glw:C, 8glw:D, 8glw:G, 8glx:F, 8glx:B, 8glx:G, 8glx:E, 8glx:C, 8glx:A, 7mbw:A, 7mbw:B, 7mbw:C, 7mbw:D, 7mcs:A, 7mcs:D, 7mcs:B, 7mcs:C, 7mcs:E, 7mcs:F, 8vcj:B, 8vcj:F, 8vcj:C, 8vcj:A, 8vcj:D, 8vcj:E, 8vcj:G, 8vct:C, 8vct:B, 8vct:G, 8vct:E, 8vct:F, 8vct:A
23 4bqf:B 827 28 0.1277 0.0145 0.4286 9.0 4bqe:A, 4bqe:B, 4bqf:A, 4bqi:A, 4bqi:B
24 8s1p:V 249 26 0.1064 0.0402 0.3846 9.1 8s1u:V
25 3pr3:A 578 39 0.1277 0.0208 0.3077 9.5 3pr3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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