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BioLiP
>protein
MTKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVRGNPNDADKGNIQTVNFANLPHNKNTLLVK
YNVKFVGDVFKAELGGGEYSNTLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFTFSDLLVNEF
DEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFPSQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWY
EDATTPIAVEPYGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVFGGG

The query sequence (length=304) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8k0k:C 304 303 0.9967 0.9967 1.0000 0.0 8k0k:D, 8k0k:E, 8k0k:F, 8k0k:G, 8k0k:H, 8k22:G, 8k22:I, 8k22:J, 8k22:K, 8k22:L, 8k22:M, 8k23:G, 8k23:I, 8k23:J, 8k23:K, 8k23:L, 8k23:M, 8k23:g, 8k23:i, 8k23:j, 8k23:k, 8k23:l, 8k23:m, 8k24:g, 8k24:i, 8k24:j, 8k24:k, 8k24:l, 8k24:m, 8k24:G, 8k24:I, 8k24:J, 8k24:K, 8k24:L, 8k24:M, 8k27:D, 8k27:C, 8k27:G, 8k27:F, 8k27:E, 8k27:H, 8k28:C, 8k28:D, 8k28:E, 8k28:F, 8k28:G, 8k28:H, 8k29:C, 8k29:D, 8k29:E, 8k29:F, 8k29:G, 8k29:H, 7wwu:C, 7wwu:D, 7wwu:E, 7wwu:F, 7wwu:G, 7wwu:H, 7wwv:C, 7wwv:D, 7wwv:E, 7wwv:F, 7wwv:G, 7wwv:H
2 7elm:E 337 332 0.4507 0.4065 0.4127 4.06e-70 6b44:D, 6b44:E, 6b44:F, 6b44:G, 6b44:H, 6b45:D, 6b45:E, 6b45:F, 6b45:G, 6b45:H, 6b46:D, 6b46:E, 6b46:F, 6b46:G, 6b46:H, 6b47:D, 6b47:E, 6b47:F, 6b47:G, 6b47:H, 6b48:D, 6b48:E, 6b48:F, 6b48:G, 6b48:H, 7ecv:D, 7ecv:E, 7ecv:F, 7ecv:G, 7ecv:H, 7ecw:D, 7ecw:E, 7ecw:F, 7ecw:G, 7ecw:H, 7elm:D, 7elm:F, 7elm:G, 7elm:H, 7elm:N, 7elm:O, 7elm:P, 7elm:Q, 7elm:R, 7eln:D, 7eln:E, 7eln:F, 7eln:G, 7eln:H, 7eln:N, 7eln:O, 7eln:P, 7eln:Q, 7eln:R, 7eqg:E, 7eqg:F, 7eqg:G, 7eqg:H, 7eqg:I, 7jzw:E, 7jzw:F, 7jzw:G, 7jzw:H, 7jzw:I, 7jzx:E, 7jzx:F, 7jzx:G, 7jzx:H, 7jzx:I, 7jzy:E, 7jzy:F, 7jzy:G, 7jzy:H, 7jzy:I, 7jzz:E, 7jzz:F, 7jzz:G, 7jzz:H, 7jzz:I, 6ne0:D, 6ne0:E, 6ne0:F, 6ne0:G, 6ne0:H, 7t3j:E, 7t3j:F, 7t3j:G, 7t3j:H, 7t3j:I, 7t3k:E, 7t3k:F, 7t3k:G, 7t3k:H, 7t3k:I, 7t3k:e, 7t3k:f, 7t3k:g, 7t3k:h, 7t3k:i, 7t3l:E, 7t3l:F, 7t3l:G, 7t3l:H, 7t3l:I, 7t3l:e, 7t3l:f, 7t3l:g, 7t3l:h, 7t3l:i, 7taw:E, 7taw:F, 7taw:G, 7taw:H, 7taw:I, 7taw:e, 7taw:f, 7taw:g, 7taw:h, 7taw:i, 7tax:E, 7tax:F, 7tax:G, 7tax:H, 7tax:I, 5uz9:D, 5uz9:E, 5uz9:F, 5uz9:G, 5uz9:H, 6vqv:F, 6vqv:G, 6vqv:H, 6vqv:I, 6vqv:J, 6vqw:E, 6vqw:F, 6vqw:G, 6vqw:H, 6vqw:I, 6vqx:E, 6vqx:F, 6vqx:G, 6vqx:H, 6vqx:I, 6w1x:D, 6w1x:E, 6w1x:F, 6w1x:G, 6w1x:H, 7we6:D, 7we6:E, 7we6:F, 7we6:G, 7we6:H, 7we6:N, 7we6:O, 7we6:P, 7we6:Q, 7we6:R, 6whi:D, 6whi:E, 6whi:F, 6whi:G, 6whi:H, 5xlo:B, 5xlo:C, 5xlo:D, 5xlo:E, 5xlo:F, 5xlp:D, 5xlp:E, 5xlp:F, 7yhs:D, 7yhs:F, 7yhs:G, 7yhs:H, 7yhs:I
3 7eqg:D 309 323 0.4276 0.4207 0.4025 9.81e-66 6b44:C, 6b45:C, 6b46:C, 6b47:C, 6b48:C, 7ecv:C, 7ecw:C, 7elm:C, 7elm:M, 7eln:C, 7eln:M, 7jzw:D, 7jzx:D, 7jzy:D, 7jzz:D, 6ne0:C, 7t3j:D, 7t3k:D, 7t3k:d, 7t3l:D, 7t3l:d, 7taw:D, 7taw:d, 7tax:D, 5uz9:C, 6vqw:D, 6vqx:D, 6w1x:C, 7we6:C, 7we6:M, 6whi:C, 5xlo:A, 5xlp:C, 7yhs:C
4 6vqv:E 285 315 0.3980 0.4246 0.3841 9.58e-60
5 8w1p:A 325 317 0.3454 0.3231 0.3312 1.08e-43 8w1p:B, 8w1p:C, 8w1p:D, 8w1p:E, 8ydb:I, 8ydb:H, 8ydb:G, 8ydb:F, 8ydb:E, 8yeo:I, 8yeo:E, 8yeo:F, 8yeo:G, 8yeo:H, 8yh9:H, 8yh9:G, 8yh9:E, 8yh9:D
6 8yh9:I 302 312 0.3388 0.3411 0.3301 5.71e-42 8w1p:F, 8ydb:D, 8yeo:D, 8yh9:F
7 6pif:F 310 323 0.2895 0.2839 0.2724 1.61e-24 8fuk:F, 6lnb:B, 6lnc:B, 6pig:F, 6pij:F, 6uvn:C, 6v9q:G, 6vbw:G
8 6pij:A 351 348 0.3092 0.2678 0.2701 1.29e-23 8fuk:A, 8fuk:B, 8fuk:C, 8fuk:D, 8fuk:E, 6lnb:G, 6lnb:F, 6lnb:E, 6lnb:D, 6lnb:C, 6lnc:G, 6lnc:F, 6lnc:E, 6lnc:D, 6lnc:C, 6pif:A, 6pif:B, 6pif:C, 6pif:D, 6pif:E, 6pig:A, 6pig:B, 6pig:C, 6pig:D, 6pig:E, 6pij:B, 6pij:C, 6pij:D, 6pij:E, 6uvn:G, 6uvn:F, 6uvn:E, 6uvn:H, 6uvn:D, 6v9q:B, 6v9q:C, 6v9q:D, 6v9q:E, 6v9q:F, 6vbw:B, 6vbw:C, 6vbw:D, 6vbw:F, 6vbw:E
9 7u5d:G 300 268 0.2105 0.2133 0.2388 1.88e-12 7u5e:G
10 7u5d:B 342 346 0.2632 0.2339 0.2312 4.56e-12 7u5d:C, 7u5d:D, 7u5d:E, 7u5d:F, 7u5e:B, 7u5e:C, 7u5e:D, 7u5e:E, 7u5e:F
11 5oql:Z 639 39 0.0461 0.0219 0.3590 2.8
12 6rxt:CI 822 39 0.0461 0.0170 0.3590 3.3 6rxu:CI, 6rxv:CI, 6rxx:CI, 6rxy:CI, 6rxz:CI
13 8g6f:J 211 117 0.0921 0.1327 0.2393 4.3 5fmg:J, 5fmg:X, 8g6e:J, 8g6e:X, 8g6f:X
14 4em3:A 437 37 0.0493 0.0343 0.4054 4.3 4em3:B, 4em4:A, 4em4:B, 4emw:A, 4emw:B, 4eqr:A, 4eqr:B, 4eqs:A, 4eqs:B, 4eqw:A, 4eqw:B, 4eqx:A, 4eqx:B, 1yqz:B, 1yqz:A
15 5w11:B 440 151 0.1151 0.0795 0.2318 6.5 5w11:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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