Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a0b:Z 62 62 1.0000 1.0000 1.0000 2.76e-37 3a0b:z, 3a0h:Z, 3a0h:z, 2axt:Z, 2axt:z, 5b5e:Z, 5b5e:z, 5b66:Z, 5b66:z, 7cji:Z, 7cji:z, 7cjj:Z, 7cjj:z, 7cou:Z, 7cou:z, 7czl:z, 7d1t:Z, 7d1t:z, 7d1u:Z, 7d1u:z, 6dhe:Z, 6dhe:z, 6dhf:Z, 6dhg:Z, 6dhh:Z, 6dho:Z, 6dhp:Z, 5e79:Z, 5e79:z, 5e7c:Z, 5e7c:z, 7eda:Z, 9evx:Z, 9evx:z, 8ez5:Z, 8f4c:Z, 8f4d:Z, 8f4e:Z, 8f4f:Z, 8f4g:Z, 8f4h:Z, 8f4i:Z, 8f4j:Z, 8f4k:Z, 4fby:Z, 4fby:l, 8gn0:Z, 8gn1:z, 8gn1:Z, 8gn2:Z, 8gn2:z, 5gth:Z, 5gth:z, 5gti:Z, 5gti:z, 5h2f:Z, 5h2f:z, 8ir5:Z, 8ir5:z, 8ir6:Z, 8ir6:z, 8ir7:Z, 8ir7:z, 8ir8:Z, 8ir8:z, 8ir9:Z, 8ir9:z, 8ira:Z, 8ira:z, 8irb:Z, 8irb:z, 8irc:Z, 8irc:z, 8ird:Z, 8ird:z, 8ire:Z, 8ire:z, 8irf:Z, 8irf:z, 8irg:Z, 8irg:z, 8irh:Z, 8irh:z, 8iri:Z, 8iri:z, 4ixq:Z, 4ixq:z, 4ixr:Z, 4ixr:z, 6jlj:Z, 6jlj:z, 6jlk:Z, 6jlk:z, 6jll:Z, 6jll:z, 6jlm:Z, 6jlm:z, 6jln:Z, 6jln:z, 6jlo:Z, 6jlo:z, 6jlp:Z, 6jlp:z, 5kaf:Z, 5kaf:z, 5kai:Z, 5kai:z, 3kzi:Z, 5mx2:Z, 5mx2:z, 7nho:Z, 7nhp:Z, 7nhq:Z, 4pbu:Z, 4pbu:z, 4pj0:Z, 4pj0:z, 7rf1:Z, 7rf2:Z, 7rf3:Z, 7rf4:Z, 7rf4:z, 7rf5:Z, 7rf6:Z, 7rf7:Z, 7rf8:Z, 4rvy:Z, 4rvy:z, 5tis:Z, 4tnh:Z, 4tnh:z, 4tni:Z, 4tni:z, 4tnj:Z, 4tnj:z, 4tnk:Z, 4tnk:z, 4ub6:Z, 4ub6:z, 4ub8:z, 5v2c:Z, 5v2c:z, 4v62:AZ, 4v62:BZ, 4v82:AZ, 4v82:BZ, 6w1o:Z, 6w1p:Z, 6w1q:Z, 6w1q:z, 6w1r:Z, 6w1u:Z, 6w1v:Z, 5ws5:Z, 5ws5:z, 5ws6:Z, 5ws6:z, 3wu2:Z, 3wu2:z, 7yq7:Z, 7yq7:z, 5zzn:Z, 5zzn:z
2 7n8o:Z 60 60 0.6935 0.7167 0.7167 3.90e-26 7n8o:z, 7rcv:Z, 7rcv:z, 8tow:Z, 8tow:z
3 8wql:ZD 60 60 0.6452 0.6667 0.6667 9.44e-24 8wql:ZE, 8wql:Z1
4 7oui:Z 62 58 0.5000 0.5000 0.5345 1.46e-16 3jcu:Z, 3jcu:z, 7oui:z, 5xnl:Z, 5xnl:z, 5xnm:Z, 5xnm:z
5 7pi5:Z 61 60 0.4677 0.4754 0.4833 3.04e-14 7pi5:z, 7pin:Z, 7pin:Z1, 7pin:z1, 7piw:Z, 7piw:z, 7pnk:Z
6 7y5e:z6 60 60 0.4516 0.4667 0.4667 5.14e-14 7y5e:ZL, 7y7a:Z9, 7y7a:ZE, 7y7a:zO, 7y7a:zZ, 7y7a:Zm
7 8wb4:z 61 61 0.4355 0.4426 0.4426 1.63e-13 8wb4:Z, 8xr6:Z, 8xr6:z
8 8xlp:z 61 61 0.4194 0.4262 0.4262 1.90e-13 8xlp:Z
9 4yuu:Z2 59 59 0.3548 0.3729 0.3729 4.38e-10 4yuu:z2
10 7ymi:Z 59 53 0.3871 0.4068 0.4528 7.40e-10 7ymi:z, 7ymm:1Z, 7ymm:2Z, 7ymm:3Z, 7ymm:4Z
11 8iwh:Z 61 52 0.3226 0.3279 0.3846 2.77e-04 8j5k:Z, 8j5k:z, 6jlu:Z, 6jlu:z
12 6j3y:Z 59 52 0.2903 0.3051 0.3462 0.005 6j3y:z, 6j3z:Z, 6j3z:z, 6j40:Z, 6j40:z, 7vd5:Z, 7vd5:z
13 8c9e:A 921 42 0.2097 0.0141 0.3095 1.1 8c9f:A, 8c9g:A, 8c9g:B
14 2xzj:A 386 20 0.1290 0.0207 0.4000 1.2 4m4v:A, 2xzi:A, 2xzi:B, 2xzj:B, 2xzk:A, 2xzk:B
15 8gz2:B 1174 45 0.1452 0.0077 0.2000 2.9 8gz1:B
16 8fhd:A 1294 45 0.1452 0.0070 0.2000 3.0
17 1ffy:A 917 27 0.1290 0.0087 0.2963 3.8 1qu2:A, 1qu3:A
18 3jzd:A 354 38 0.1613 0.0282 0.2632 7.5 3jzd:B, 3jzd:C, 3jzd:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218