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BioLiP
>protein
MTELFQELLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALQNDERFGIWGGLSERERR
RLKKK

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dy7:H 85 85 1.0000 1.0000 1.0000 1.38e-57 8dy9:H
2 5oay:A 76 74 0.3647 0.4079 0.4189 1.41e-15 6ono:A, 6ono:C, 6onu:A, 6onu:C, 6onu:E, 6onu:G
3 8cwr:A 85 73 0.3412 0.3412 0.3973 3.67e-09 8cwt:A, 8cwt:C, 8cwt:E, 8cyf:A
4 7kim:Z 80 49 0.2235 0.2375 0.3878 9.92e-09 7kif:Z, 7kuf:A, 7kug:A, 7kug:C
5 6qe6:A 226 29 0.1294 0.0487 0.3793 0.18 6qe6:B
6 5hsj:A 606 45 0.1765 0.0248 0.3333 0.72 5hsj:B
7 3lm8:A 214 55 0.1765 0.0701 0.2727 1.4 3lm8:B, 3lm8:C, 3lm8:D
8 7cx0:B 603 19 0.0941 0.0133 0.4211 1.9 7cwz:A, 7cwz:B, 7cwz:C, 7cx0:A, 7cx0:C, 7cx1:A, 7cx1:B, 7cx1:C
9 8d5v:A 84 41 0.1647 0.1667 0.3415 2.1 8d5v:C
10 2d0v:A 597 15 0.1059 0.0151 0.6000 2.2 2d0v:D, 2d0v:I
11 7u62:H 222 29 0.1294 0.0495 0.3793 2.3 7u61:H, 7u62:I
12 7bxv:H 217 29 0.1294 0.0507 0.3793 2.5
13 6sga:DP 212 30 0.1529 0.0613 0.4333 3.5 6hiv:DP, 6hiw:DP, 6hiy:DP, 7pua:DP, 7pub:DP, 6sgb:DP
14 1mex:H 211 27 0.1176 0.0474 0.3704 3.8 1a0q:H
15 6kd7:A 327 21 0.1412 0.0367 0.5714 4.0
16 6vxe:A 789 28 0.1412 0.0152 0.4286 4.6 6vxe:B, 6vxe:C, 6vxe:D, 6vxe:E, 6vxe:F, 6vxe:G, 6vxe:H
17 7m1q:A 1911 53 0.1765 0.0078 0.2830 5.6
18 7e7q:A 1958 53 0.1765 0.0077 0.2830 5.6
19 7e7o:A 2003 53 0.1765 0.0075 0.2830 5.6 7lkp:A
20 4o29:A 207 22 0.1176 0.0483 0.4545 5.9
21 5xm3:A 596 20 0.0941 0.0134 0.4000 6.9 5xm3:C
22 7wrx:H 594 46 0.1647 0.0236 0.3043 7.4 7wrx:A, 7wrx:B, 7wrx:C, 7wrx:D, 7wrx:E, 7wrx:F, 7wrx:G, 7wrx:I, 7wrx:J, 7wrx:K, 7wrx:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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