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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLG
ERFDQKIIDKTLALLSGKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMA
TSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQA
LEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNG
AAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGE

The query sequence (length=355) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5cd4:F 363 362 1.0000 0.9780 0.9807 0.0 5cd4:B, 5cd4:C, 5cd4:D, 5cd4:E, 5cd4:G, 5cd4:N, 5cd4:O, 5cd4:P, 5cd4:Q, 5cd4:R, 5cd4:S, 5h9e:E, 5h9e:F, 5h9e:G, 5h9e:H, 5h9e:I, 5h9f:E, 5h9f:F, 5h9f:G, 5h9f:H, 5h9f:I, 4qyz:D, 4qyz:E, 4qyz:F, 4qyz:G, 4qyz:H, 4tvx:F, 4tvx:D, 4tvx:E, 4tvx:C, 4tvx:B, 4tvx:G, 4tvx:R, 4tvx:P, 4tvx:Q, 4tvx:O, 4tvx:N, 4tvx:S, 4u7u:E, 4u7u:F, 4u7u:G, 4u7u:H, 4u7u:I, 4u7u:J, 4u7u:Q, 4u7u:R, 4u7u:S, 4u7u:T, 4u7u:U, 4u7u:V
2 5h9e:D 318 360 0.8761 0.9780 0.8639 0.0 5h9f:D
3 4qyz:I 256 208 0.5493 0.7617 0.9375 2.93e-141
4 4qyz:I 256 60 0.1690 0.2344 1.0000 6.33e-36
5 6c66:B 334 318 0.2958 0.3144 0.3302 9.33e-43
6 6c66:C 367 335 0.3070 0.2970 0.3254 1.50e-40 6c66:D, 6c66:E, 6c66:F, 5u07:E, 5u07:F, 5u07:G, 5u07:H, 5u0a:E, 5u0a:F, 5u0a:G, 5u0a:H
7 8yb6:G 377 328 0.2930 0.2759 0.3171 8.46e-38 8yb6:D, 8yb6:E, 8yb6:F, 8yb6:H, 8yha:E, 8yha:F, 8yha:G, 8yha:H
8 8yha:D 355 326 0.2761 0.2761 0.3006 2.51e-30
9 5u07:D 260 166 0.1831 0.2500 0.3916 4.49e-28 5u0a:D
10 5u07:D 260 46 0.0620 0.0846 0.4783 1.07e-07 5u0a:D
11 8yb6:I 268 169 0.1662 0.2201 0.3491 2.71e-24 8yha:I
12 8yb6:I 268 48 0.0704 0.0933 0.5208 6.57e-09 8yha:I
13 6c66:H 329 334 0.2704 0.2918 0.2874 1.98e-23 5u07:I, 5u0a:I
14 4fgm:A 587 43 0.0394 0.0239 0.3256 1.5
15 4fee:A 586 189 0.1183 0.0717 0.2222 8.7 2ez4:A, 2ez4:B, 2ez8:A, 2ez8:B, 2ez9:A, 2ez9:B, 2ezt:A, 2ezt:B, 2ezu:A, 2ezu:B, 4fee:B, 4feg:A, 4feg:B, 6haf:A, 6haf:B, 4kgd:A, 4kgd:B, 1pow:A, 1pow:B, 1pox:A, 1pox:B, 1y9d:B
16 7pks:g 886 79 0.0563 0.0226 0.2532 9.6 8rbx:g, 8rbz:g
17 7ycx:G 910 79 0.0563 0.0220 0.2532 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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